Array 1 45112-45587 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UGZE01000001.1 Staphylococcus arlettae strain NCTC12413, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	====================================	=======================================	==================
     45112	    36	 100.0	    36	....................................	TTCATGCGACCATTTAAAATTGCTTCCCCTTTTTGT   	
     45184	    36	 100.0	    37	....................................	TGTTCATATTCAAACCGGAGTTTGTTTACTAACATTT  	
     45257	    36	 100.0	    37	....................................	TTCTGTAACGGTTGCCGGCTTGGTCTTGGTCGTTTAA  	
     45330	    36	 100.0	    38	....................................	AATTGGTCGAAACCATTTCCACCAACGATTTCATTTAA 	
     45404	    36	 100.0	    39	....................................	TCTAACGGGTCGTGCTCATACATGCAAATACTGTCTGCT	
     45479	    36	 100.0	    38	....................................	CTAGGGTACCATGTTTATCTGTAGTCTTGTTATAGTAC 	
     45553	    35	  91.7	     0	...............................-..GT	|                                      	
==========	======	======	======	====================================	=======================================	==================
         7	    36	  98.8	    38	GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC	                                       	       

# Left flank :   AATCCAATTGGCGAAGGGTTGCTAGTTGTTTAGCATCGCAGAATTATATTTCGATAGTAAAAGGTTTGGTACATCATTTCACAGCCATCGATGACGAGGAAATACTTGATAAAATCTATGAAGAATTTATGAATGATGACTCCATCACAATATTACTTAACAATGATTTTCAAGATATTATCAATCGCTACTTATCAAAATGAAGATACATTACTTTTTAATAAACTAAGAGCATCCTTCACTTTGCGGTGAAGGATGCTCTAATGTTTATTTTTTGTTTAAAATTTAAAAAGAAATGAAAAGTTAAATTTATATTAATTTTATTATATGATTAAGCGAGATCATCTGAAGTGTAGTATACTATTAATACAAGAAAAGTTATTATAAAACTTGTCAAAAAATATGACATATCATATAGTAACAGACTATCAAGTGTCATATTTTTTGACAGCAAAAATGATACTTAAACTATGGTTGTCACGGCATTTGTTACAGTATCG
# Right flank :  TGTATTTTTTATAAGCACTCTAAAAAATTTAAAAAAACTACATTGATTAATTTTTAGGGGATGGAAAGTGAAAAATGTTATTTATGTGGAAAATCATTACTTTGTCACTGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTCTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAGAAACATTCTCCACTAACTCAACTTATTTCCTCTTATGGAATGACACATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTAACAGGAAGAACTAGAGAGAGAATATGGAAGAAGATTGTTATAAATAAAATTATTAATCAAGCACGATGTCTTGAAAATAATTTACATACAGGAAATGTTAAATTATTGTTAGAATTTTCAAAAGAAGTTAGTACAGGAGATA

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:51.35%AT]
# 	Reference repeat match prediction:         F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-7.80,-6.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : III-A [Matched known repeat from this family],   
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