Array 1 23973-22917 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZR01000028.1 Neisseria meningitidis strain NM2813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23972 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 23906 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 23840 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 23774 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 23708 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 23642 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23576 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 23510 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAATCGACG 23444 36 100.0 0 .................................... - Deletion [23409] 23408 30 80.6 30 ------C............................. TCCTGCCAATTATCATACATAAGATTTTGC 23348 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23282 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23216 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTA 23150 36 97.2 30 ..............C..................... AATAACAACCATTTTGTTATTTCGATTTTA 23084 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 23018 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 22952 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 98.4 28 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : CCCCCTTTCTCATTTCGCAGTGCTACAATACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //