Array 1 222262-223683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAAED010000002.1 Streptococcus agalactiae strain iGBS374 NODE_2_length_239734_cov_66.718, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 222262 36 100.0 30 .................................... ATAGTTGTTGTAATAAGTGAAATTTTTGTA 222328 36 100.0 30 .................................... ATAATCTTCTGAAATTGTTGCTTCGTAATA 222394 36 100.0 30 .................................... GTTGCATGAATTGAAAGTTCAATATAAGCA 222460 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 222526 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 222592 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 222658 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 222724 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 222790 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 222856 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 222922 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 222988 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 223054 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 223120 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 223186 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 223252 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 223318 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 223385 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 223451 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 223516 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 223582 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 223648 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //