Array 1 176542-175126 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGS01000005.1 Salmonella enterica strain 4233 contig0000005_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 176541 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 176480 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 176418 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 176357 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 176296 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 176235 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 176174 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 176113 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 176052 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 175991 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 175930 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 175869 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 175808 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 175746 29 100.0 74 ............................. AATAAGGCGCGGTACCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 175643 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 175582 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 175521 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 175460 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 175399 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 175338 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 175277 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 175216 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 175155 29 96.6 0 A............................ | A [175128] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 193801-192674 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGS01000005.1 Salmonella enterica strain 4233 contig0000005_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193800 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 193739 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 193678 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 193617 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 193556 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 193495 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 193434 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 193373 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 193312 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 193251 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 193189 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 193128 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 193067 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 193006 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 192945 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 192884 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 192823 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 192762 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 192701 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //