Array 1 3-788 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912413.1 Actinomadura oligospora ATCC 43269 P696DRAFT_scaffold00022.22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 94.6 37 ...................G..A.............. AGCGCAAAGGGATGTTGCTGGACGTGCCCTATACCGA 77 37 91.9 39 ...........T.......G..A.............. GCCCTCAACACGCCCGGCGGCATCGTCGACTTGCGCACC 153 37 100.0 38 ..................................... ATCAAGGTGTGGGGTGACAGCGCAGGCGAACCAGTCAT 228 37 97.3 39 ..................A.................. GACTACCTCATCGAGGGCGTGAGCCGATCGGTGATCCGG 304 37 94.6 36 ...................G......G.......... GCGTTGCCGCGCAGGTCCGTCGTGGTGGGCTGCGTC 377 37 89.2 40 ...............G.C.G.A............... AGGTCAGTTACGGCCTCAACCCTGTCAGCAGGGATGACGC 454 36 86.5 37 ........-.....T..A.G........A........ CACGACACCCCGCGGAGCGAGCCGTCAGCGGTGCCGA 527 37 100.0 39 ..................................... CGGTTCCTGGCCGCGCACCGTGCCGCCCCATCGCTGCGA 603 35 86.5 38 .........--........GTA............... ACCTGGGTGTCCAGGTACTTGAAGCGGACTTTTGCGCC 676 37 94.6 39 ...............T...G................. TGATTTGCCACGGAGTTGATCGCGCCGACGTGCCAAGCG 752 37 78.4 0 ............T..T.C.G.A.......GC..T... | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 92.1 38 GTGGCGCCCGCCCTCCGGGACGGGCGAGGATCGCAAC # Left flank : CGG # Right flank : CCTGCACAGGCACTGCAGCGGCTTGTTGCTCCCGGCCGGTTGACGCCCCCTCGGACGATGCAGCAGGCATGCGTTGGGGCTTGTGGTGCAAGGAATGACTCTGTCCGAAATGTGCGGTGGCGCGGAGTCAGAGTGTCCTTCTTGCTGATGACTCCTTCCTGGCAGCCGGTCTGGTGGCCGCATCTGGTCAGTGCGGGTGGAGTTGGTCCAATGTCAGCGCGGATTGTCAGAGCTACTTCGTATCTTCGCCTTCCAACGCAACGTCGTGTTTTGGGGGCAGACCGTGACGAGTGGTCTATGGGCGCATAGTGCGAACCCGGCAGGTCACCGGCATGCGCTGGAAGATCACCTGCGAGACACCGCTGAGTTGGCTGGCCGGTTCGCGGCAGTATTCGGGGTTGCTGACCTGGCCGGTTACGTCGGGCTTGTGCATGACGTCGGCAAGGGCGCGTGCCCATGGCAGGACGGGCTTGTACGGGCTGAGAGATCCGGTGGGCCGG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCCGCCCTCCGGGACGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.60,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10413-9861 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912413.1 Actinomadura oligospora ATCC 43269 P696DRAFT_scaffold00022.22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 10412 37 97.3 35 N.................................... GACGGCGGCTGGAGCAAGGGCAGCCTCGCCCGGAC 10340 37 100.0 37 ..................................... TTGCTGTGCCTCGCGACGAATCACAAGCCGCGATTCG T [10324] 10265 37 94.6 37 .........A.........A................. CCCTGAGGGTTGGCGTCCGACGGCGGGACCGTCCGCA 10191 37 100.0 38 ..................................... GTCGAAGACCCCAAGGGCATCCGGGCCGTCCTCGACAC 10116 37 100.0 38 ..................................... GACGCTGACGTGCACGCCAAGCTGAACGCCGGTACGTA 10041 37 91.9 35 G......................A....A........ GACCGTGTGCAGCCGAGATGGTCAGCGATGTCCTG G [10021] 9968 37 89.2 35 G....A....T....G..................... ACCAAGTCGCAGACCGCCGCGCCGACCTCCGACAT 9896 36 89.2 0 G............G...................-.T. | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 95.3 37 CTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGTCGGGGTCTTTACTCGGTGCGCTTCTGGCGTACTCCGGCCGTCCCTCATGTGACCGTGTCAAGGTCACCGCGGGATGCGATGATTGAAAACAACCATCGGTAAAGCTAATCCATTGGTCGACCTGGAGGATCATATCCGACCGACCGCCGAGCCCCCCCGGAGGCGAGTTCGTGGCCAGCAGCACCTTTGTCCCGGTCACCCTCGGTGTTATGACGGCCGCGGTGGCGCTGGTCGGCTACTGGTCGAACCTGTTTATGAAGCGGCGGGAGGCCAGGGGCCAAATGTACGCCGAAGCGCTCCAGGTGATTCACCGCTACGAGGAGCTTCCGTACATGATCAGGTATCGGCCGGCTTCGGACAGCCAGGTCAGGGCAGACCTCGGCGAGCGAATCAGTGAGGTCTTTCTCAGCGTCTCTTACTACCAGACGCTGCTGACCATGGATTCCCGTGTGGTCGGCGAGGCTTACGCGGAGCTGTATAAACAGACGCGGCGGGGC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGCCCGCCCTCCGGGGCGGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCTGCGCCCGGCCTCCGCGCCGGGCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-15.50,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 95800-95528 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912411.1 Actinomadura oligospora ATCC 43269 P696DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95799 28 96.6 32 ....................-........ GGCCACTTGATCTTCCGCTTGGTGGTCTTGCG 95739 29 100.0 32 ............................. CGCCACGGATCTGCTCCCTGTGCTCCTCATCC 95678 29 100.0 32 ............................. CGCCATCCGGCGGCGGACTGGCCGAGGTGAAC 95617 29 100.0 32 ............................. TACGAGGCGGGCTACGCCGGCACCTTGGACTA 95556 29 96.6 0 ..............G.............. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGTGCGCCTGAAGGTTGCGCCTCAGCAGGATGGTTGTGTGTCCGCCAAGCGGTGACACCGAGCTTGATGCGACTATCGGGGGCGTGCCCCAACGAGTGAAGTTCTCCGTTCTCGTTTCACAGCTGACGAAGCACCCAGATCATTACTCGAGGTCGAGTGGCCCGACGGAACGGAGTGGAGGACCCTGGCTCGGTCGGGCATTGTCGTGGTGATCAGCGCCTGGCCTACTTCATGCTATGTCCCGGCAACTCGCGATCACGTCGCAGCCACCACCTCTCTTTCCGGGGGCTGGGTACATTCGCTGGCATGCAGCGTTTGAGCGCGCTCAAGCTCGTAGCGGAGACTGCAATTACCTTCCGCAGATCCGCCACAGGTTGGGCCTGGTCGAATTCCGTCCCGCCATCCACTGGCGACGGTGTAGAGGTGTGTCCGATTTGTCGGACTCGCATGAAGTGCTCGAAACTGGCGCTGTGGCCGCGCAAACGTGCAGGTCAGTGAGT # Right flank : TCCGCGTCGTCGCTCGCGGGACCGCCGTCGGCGCGACCGTCCCGTGCGGATTGGGTGGAGGCGGCGCGTTGTCCTGTGGGTGATTCGTCGGATTTATCCGAGGGGCGGGTCGCGGCGAGCGGCGGGGAGGTGCGGATGCGGAGGCGCGGAGAAGTGTTTGCGGGGGGTGGGGGATGTGAACGCGGAGCTTGGCGTGGGGGTGGACGGGGTCCGTTGGGGTGGTGTGTGAACCGGCTGGGTGGCCTGTGGTGGGGGTTGAGCCACTAACGAATGGCTAACAAACGATCAAGAGGCCGGTTCTCCGTGGTGGAGAACCGGCCTCTGACCTGCTACTTTCCGGTCGGGACGGCGGGATTTGAACCCACGACCCCTTGACCCCCAGTCAAGTGCGCTGCCAAACTGCGCTACGTCCCGGTGTTTTGCCCCCTCGTTGAGCGGGCGTGATTACTCTAGCGCAGTTCCAGGGCTAGTGCGTACCGGGAAAGCGGGTGGCGGGTCGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 175908-176669 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912411.1 Actinomadura oligospora ATCC 43269 P696DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 175908 29 100.0 32 ............................. TGGAAGAGCGGTTCGGATTGAGCGTGGTGGAA 175969 29 96.6 34 ............................A CGTCTCCTCCATCCGCCCGGCCCGGCTCGTCCGG 176032 29 96.6 32 .................A........... ACGGGGACGAGCGCGGTGTAGACCTGCTGGAT 176093 29 100.0 32 ............................. AGGGCGCTGATCAGCGCTTTGCGTCCGGCGGC 176154 29 100.0 32 ............................. GGCGCTCCGCTGATCGGCCCGTTCTCGGGCTA 176215 29 96.6 32 ............................T CGGGGGCCGCTGCATCCCGTGGGCGCGGTCCT 176276 29 96.6 31 .......................A..... CTCTTGGTGTGGTGGGTGATGCCGGGGGGAA 176336 29 96.6 32 ..................A.......... AACGGGGTGGTCGTCGTGACGACCGACTCGAT 176397 29 100.0 32 ............................. AAGGCCGGACACGTGCGGGAGAACCCGAGCTA 176458 29 96.6 32 ...............A............. GGAGGTGAAATGCACGTCCACGTGAGCCCCGT 176519 29 100.0 32 ............................. TTCCCGTGGTGCGACGCGCTGATCACCTACTC 176580 29 100.0 32 ............................. GGCCCGATGAACCGGTCCGAGGCTGCGGCGAC 176641 29 89.7 0 ....................A...C...G | ========== ====== ====== ====== ============================= ================================== ================== 13 29 97.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCAGCCGAAGATCTTCCCCCTCATCACTGATCATGACGGCATTTAACAACAGATGGTCGGTGTCGTCCCTCAATTCAGCCAACTCGCAAGCGTCAACCCCCAAACGATCATCTTGCCCCCTGGTGAGCCCACTCCACATGCACAGCGATCACCACGTCCGGACACCGAACACCGCGTCCACTCGCAGTACGCGCCTCGATCGAGTGATACGACGAGCAAGCCATCCCGTACACCCGAGGTCCCACCGACATGCATGTTGCACTCGCCAAGCCTTCGGAGACGTCCCATGCCTGCACTTAACGCGGGGGATGTAGGTTTCAAGCCAAGCGACCACGTCCCGTGGGCCCCAGCCACCCAACCCCCACACCGGAGCCCTCGTGAAAGTCCAGCACCTTGCCGGCCCCTCAAACCTTCACAAATCACATACGTCCGATTTGTCCAACCCGCAGGAAGTACTCGAAAACGGCCCCACGGCCCGGTAGACCTGCAGGTCGCGGAGT # Right flank : GAGGCTGGTCTCGTGGCCGGAGCCCAGGGCGGGTACTACCACGCAGGGTGGTGGAAGATCCCTGAATTGGAACGCGGCGGACGGCGGGACGGGGCTTCCGGCGCATGCGGGAGAATTCCTACGTATGGCTCGCTGGCGGTTGGTGGGTCGCCTCCCCGCATCAAGGAAGCGTGATCGCCCGGTGCTCAATCAGGTGTGGGGCGTGGCGCATCGCACGGCGCGTGGAGGCTGAGGTAGGGCGGGGGACGAGGTGGCGCGGACGACGCAGTTGCGGACGTACACGATTCGGGATGGGCTGCTGGACGAGCGGGCTCGGCGGTGGCGGGACGAGATCGTGCCGTTGAGGTTGGAATTGGGTTTCGAGATCGGCGGGGCCTGGCTGGATCACGAGCGTTCGCAGTTCGTGTGGGTGATCGCGTATCCGGGGCCGGAATCGTTTGAGGAGGCCAACCGCCGGTACTGGGCGTCGCCGAAGCGTGCGGTCATGGGGCTGGATCCGG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 181854-181092 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912411.1 Actinomadura oligospora ATCC 43269 P696DRAFT_scaffold00004.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181853 29 100.0 32 ............................. AGGCGTTGTCCAAGTACCTGGAGAGTCAGGCC 181792 29 100.0 32 ............................. AGGCGTTGTCCAAGTACCTGGAGAGTCAGGCC 181731 29 100.0 32 ............................. TCGGAACTCGACGTCGCAGTGCTCGCACTTCA 181670 29 100.0 32 ............................. GTCGCGCGGAACTTGTCGCCGCGGACGGTGAT 181609 29 100.0 32 ............................. TTCAGGGGCGAGCCGATGCCCGCCTTCGACGA 181548 29 100.0 32 ............................. ACGGGGCCGGAGGTCGGCGGCGCCGTAGTCGA 181487 29 100.0 33 ............................. CATGGCTGCGCCATGGTCGAGCACTACACCGGC 181425 29 100.0 32 ............................. CCGCAGGTCTCGCGGAAGGGCGGCGGGTTCGA 181364 29 100.0 32 ............................. CAGGTACTCCAGGAATACGGCCTGCCGGACAT 181303 29 100.0 32 ............................. TGCCGCCCGTCACCGTCGACCGGGGCCAGCAC 181242 29 100.0 32 ............................. ACGGGGCCGGAGGACGGCGGCGTGCCGGACAT 181181 29 100.0 32 ............................. TGCCGCCCGTCACCGTCGACCGGGGCCAGCAC 181120 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GACGACGCCGACGACACCGCCCTCGCCGCCTTCGACAAAATCCGCAGCCGCCGCCGAACCACCCCTTGAAGCATCCTCGCGGCTACCAACCTTCCGGACGGGAACGGCTTCCTCGCCGAGTCGACTGAAGGCCGTCCGCATCGTTCGGCCAGGGTGCTCCGAGTGGACCACCCAAAGCGGGCCACGATGCACATCCATCCGCCACTATTGACGAAGCGCGCCTGAAAGCGTGGTCGGTCATCCAACGGACCGGAGGATCAGCGACATCTCCCGGACAAAGCCCCACATTGTTGACCATTGGTGCACTGCCTGGCGATGCGAGACGGTTCTCGATGCACCTGCTGCTGGGGCCAACCCGCTGGTCCACCGCATACTGCGTCCGCTCTGGCGGCGACGGGCTCTTCACTGGAGGTTCCGCAGCAAGCATGTCCGATTTGCCCGTCTCCCATGAAGTGCTCGAAACTGCTGCTGCGGCCGCGCAAACGTGCAGGTCAGTAAGT # Right flank : GTCTCCCACATGCCTTCCGCGCTGACGGCGGTCTGCTCCCCGCGCGCGGGTGTGGCTCCAGCAGGTCGGGGTGAGTGCGTGCAGGTCAGTCCTGCTCGGGTGCAGGCGCGGACGGACCGCCTTTGGTCACAGGCAAGGCGTTGCTGGTCTGCGCTCCACGTGCGTTGCGTTCAGATTTTTGGAGTGTTGCCTGCCCGCGGGCGATGCTCTCCGCTCTGACCGTTGGGCGCTTGTCAGGTCGGTGCTTTCTGCACACGTGGAGGCGGGGCCTCTTGTGGCCTGAGGGTTGCGGGTGCTGGTTCGGGTTTTCGAGCATGTAGGGGAGATGATGCGGCGTCGGTGGTTCGAGCTCCTGCTGCAGGTCGTGTTGGTGCTCGTCGCCAGCTTGTTCGCGATCGCTACCAACTTCGCGACGAATGGCGACCAAGTGTCCGGGGCGCTGCGCTGGCTCCAGCGGGCGTCGGTGCCCGCGATCTTGGTGCTGGTCGTTGTGTTGGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //