Array 1 615059-614892 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN908975.1 Bittarella massiliensis strain GD6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 615058 33 100.0 34 ................................. TCGTTGCTCAAGTTTCGCAAAGGGAACCCAGAGG 614991 33 100.0 34 ................................. CCGATGGCCGTTTTGGTTGTCCCTACCAACGGCT 614924 33 97.0 0 ......................T.......... | ========== ====== ====== ====== ================================= ================================== ================== 3 33 99.0 34 GTCACCTTCCGCGAGGAAGGTGGGGATTGAAAT # Left flank : AGACGCTTACCCGCCCTTTTTGTGGAAGTGAGGAAACAATGCTGGTTCTCATCACCTATGATGTCAACACCACCGATGCCGGTGGAAAAAAGCGGCTGCGAAAGGTCGCAAAAAAGTGCGTCAACTTTGGACAAAGGGTGCAAAACTCCGTATTTGAGTGCATTTTGGACGCCGCCCAGGCCCGCCTCTTGCGCCACCAGCTAGAAGAACTCATTGACCCGGAAAAGGACAGTCTTCGGTTTTACTATCTGGGAAACAACTATCGCGGCAAGGTCGAACACATCGGCGCCAAACCCTCCTATGAGGCCGAAGGCGTACTTCTCCTCTGACGGTGCGAACGACATATAGACGTGGTTTTCCCGGTGCCTTCGCACCGGGAAAATCGCTCTTTTGCCGAAAAAATGTATGCCATCGCGAAAAAAAAGCACTGTTTGTTGAGAAGGAGCACACAAGTTACAGAAAAGCGAGGCGTATTTTTGCCTTCTTTGTGAATATCTGCT # Right flank : CAAAGGAGACGCATGTATAGCTGTGTCCTCTGCGTCACCTTCCGCGAGGAAGGGGGCCAAAATATCGATTTAGTGCGCTTTAGCGATAGCGAAGGGGGAAAAAGCAGTTGCCCCCAATCCCTGCCACTTATAGCCTCTCTTTTGCAAACAGCACGACAAAAAGGTCTCACACAACTGTGTGAGACCTTTTCTGGTGAACCACCGGGGATTCGAACCCCGGACCCTTTGATTAAAAGTCAAATGCTCTGCCAACTGAGCTAGTGGTTCATATTCTGAAAAATGCGCCCGTAAAGCGCTTATTTATAATAGCACTTGCCCCCTGCAAAGTCAACACTTTTTTGCCAAATTTCCGGAAATCTGCGGGGCGGCTGGTCGGCCCCGCGCGCCTTCTGCGCCGCTTTGAGGGAGTCATCTCTCCCCCCGCCGGCCGCGCTCCCCACTATCCTGCCCCGCTGCGCAAAAAATATACCGATTTTTTGCCGGGCCGTCGGGGCGCAAAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCTTCCGCGAGGAAGGTGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 1 88747-88975 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN908976.1 Bittarella massiliensis strain GD6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 88747 32 100.0 34 ................................ AAACAAGGAGGTTAATATCTTATGTACAGACTGC 88813 32 100.0 33 ................................ AAGAGATGGGGTTTGAAAAGACCGCTGGGCTGG 88878 32 96.9 34 .........T...................... GTATCTTGGTGCGCCGACCAGTATGGCTATCTGG 88944 32 84.4 0 ........T.A..T...T......A....... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 95.3 34 GTCGCACCCCGTGCGGGGGCGTGGGTTGAAAT # Left flank : AGTTCGGGGACAGCGCCCTGGAGATCGCCGTGCGGGTCTGGACCGAACCGGCGAAGGTCTTCCCCCTGAAATACGACCTGCTCGAGGAGATCAAGCGCACCTTTGACAGGGAGGGCATCCCCATCGCCTACCCCCATTTGGACGTGACGCTGGTCAAATAAAAAGAGCCGCTTTTTATGGCCGCCTTGACGCGCTGGACAGCGCCGGGGCGGCTTTTTGTCGCCCCAGACAGAGGGCCATTTCCGCCGCTGCACTTCCCCCGCCAACGCGAGCCCTTGCAAGCAATGGCCTTTTGGAGAAAACAGAGAGAAGGGATCTGCGTTCAAGGCAGTGCGAATGGCAAACGCACAGGGATTTCCCGGCAGGCTCGCACTGACAAAATAGGGAGAAAATGGAGAAAGAGGATGGGCGGCAAAAGAAATTGCGAGATGATTGACAAGGGTCTGTACAAAAGATATAGTAAAGGGGAAAACAGGTATTCGCTTTTATACAAGTTTGCT # Right flank : TTGGGCAGACACAGCGGTCAGTCTCGTCGAAGCTAGTCGCCCCCCTCGCGGGTGCGACAACAGACCTCTCCGCCTCCTTGCCTTCTGAGCCCAAAAAGAGCTGCCGCCGATTCTCTCGGCGGCAGCTCTTCTGCGGTGCGGGCGGCTTTAGCGGGCGGTGTCGATTTTGATTTCGTGCTCGCACTCGGCGTTGCACTGGGCGTTTTCCTTGGTGAACTTCTGCTTGGCCTGGTTGACCTTGTCGGCCTGGGCGGCGGGGGTCTGGTACCAGCCCCGCTTCTGCATCTCCTCGAAGACCTCCATCTGGATCTGGTGCTCCTCGGCGAGGATGTCCATCATCACGCCCTTCATCTGCTTGGTGGCGCACTCGTCGGCAAAGGTGTTGTAGATGCCGGTGATCTGTTTTTGCGAGCTCAGCATGTCGGTCAAAATCGACTTGTCATCCATCATGTTGTTCATCTTCCGTTCCCCTTTCCCCATCTGCCTTACAGGCAGGAGAG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGCGGGGGCGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 149315-150403 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN908977.1 Bittarella massiliensis strain GD6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 149315 33 100.0 32 ................................. CCATGTACGACTGGAATACAGAAGATGACTGG 149380 33 97.0 33 ................................A ATGAGGCGGGGCAGCCGGAGGTGACTGACGACC 149446 33 97.0 32 ................................T GTAAATGACAGGATTAGACATATTTTTCCTCC 149511 33 100.0 34 ................................. CACACGCCATCGACACACACACTGCCATAGCCGG 149578 33 97.0 32 ................................G TAATGAAGGCCCGGTATAAGCTGGGGCCCTGG 149643 33 97.0 33 ................................T GAATCCGGTCGGAAGTCCTGCGGCAGTGTTTCT 149709 33 97.0 32 ................................G CCATAAGCAACCACCATGTACTTCCGCTCCAT 149774 33 100.0 33 ................................. GCCGATGGCTCCATTTAAGATTCCGATTATTCC 149840 33 100.0 33 ................................. AGCAACTTGAAGCCATCCTTCCAGAGTACCGAG 149906 33 97.0 32 ................................G ACTGGCCCGGGATGGTGCAGTGGTATTGCGAC 149971 33 100.0 34 ................................. TCATTGACCGGCCGCCAGCCGATCAAGCAGCCCG 150038 33 97.0 33 ................................T CACGCAGACCGGGGAGCGGTGGCCGACCCGTCG 150104 33 100.0 34 ................................. TCGTGAGGACGGGGTTTTAATTCGCTCGGCTGTG 150171 33 100.0 34 ................................. CGCTATCGAAAACTGGAGAAGCGGGTAGACCAGA 150238 33 100.0 32 ................................. GCTATAAGAAGAAGTATGGTCGGGCCTATGAC 150303 33 100.0 34 ................................. CGGAGATGATGGCGTCCTCGGTCACGTCGAGGGC 150370 33 81.8 0 .....G....G...A....T...A........T | C [150395] ========== ====== ====== ====== ================================= ================================== ================== 17 33 97.7 33 GTCGCACCCCACGCGGGTGCGTGGATTGAAATC # Left flank : GGGTGGTCTTTTGGGAAAAGGCCATCTGTCAGGTCTTTCCCCAGGAGCAAAGCCAATAGGACGGTTTGTGGCTGGGATGGAGGACAGCTGCAAAGGGAGGAGAGTGGACGGGGAACCCTCTTCTCTGACTTTTGGAGTGGATGCACAGGGCGCTTGCAGGAGGGAAGCTCTTTCGCGCCAGTCTCCCTCTTTCTAGTTGACATACCCAATTTTGATTGGCTTTTTTTGCGAAAAAGCTTGTCGGGAAAGGGGCATTAGTGACAGGAGAAGGGGGAAGCGTTCTTTTTTGCGGCTCTTAAAATAGTGCAGTTCTACCCTCATTTTAGGGCGGTGCGAAGTCCAAGCGGACAGAAATTCCCCGGTGGGTTCGCACCGAAAAATTGTAAGATGGACAGGCAGAGTGAAAAAGAAGAGAAGATAGACGCCAAAAAATTGACAAGTGTTTGTGGAGAAGGTATATTGAAAGCACAAACAACAGTGTGCTTTTGTGTATGTTTGCT # Right flank : TTTATCAGTGCTCAAACCCAAAATGACCTCACTGGTCACATCCCGTGCAGATGTACATATTGCTACTTCTCTGGTTTTTCCCACGGAGTTAGAAGTTGTGCTTACATGGTAGCTGTATGCCGTGCGGGGAGAAACGGCGCGGCAGATGTAAATCGCGTATTTATAAAAGATTTTCCCTTACAGGTGTGCCGGTGGCCTATAGTCACCATCAGAGAAATCCATTGGCAGGCAAATGAGCCGATGAGAAAAAGGAGGCAGAGGTGTGAAGAATAGAGGCTTCTTGCTGGTGAGGGCCATCCCTATTTCATTTATCGTTCTGTTTTTGGCGAGGACAATGCTCAAAGCACAGAATTTTTCGAGCAGGATTGCGATCCTCCCCTTTTTGATCTGCGGCCTCACAGAGCTTTTGCGAACGATATTTTTGGCAGTGGGCTGGGAGAAGGCGGCAAAGCTGCTCTACAAGGTGTACGCCGCCAGCTTTTTGCTCTACGTGTTTGGTT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 161992-162494 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN908977.1 Bittarella massiliensis strain GD6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 161992 33 100.0 34 ................................. ACTCTGTACCATGGGCCAGAATACCTTGGAGCGC 162059 33 100.0 35 ................................. GCAGATGATCCAGCACAAGACCGTGGCTGCCCAGG 162127 33 100.0 35 ................................. ATAAGCGCCGCAAGTTCGGGACGGCCTTGCAAGGC 162195 33 97.0 33 ................................T GAAATCATGAAGAGGTCCGGGTCCCGTTCTGAT 162261 33 100.0 33 ................................. TGCAGGGAAGGCGGCGCTGATCGGGAGCGTGTG 162327 33 97.0 34 ................................T GAAGAGCGGAAAATCGTCCAAATCATGGGCATTC 162394 33 100.0 35 ................................. GTACCGGCCCCCTCCTGCAGCACCAGGTACTTTTT 162462 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= =================================== ================== 8 33 98.9 34 GTCGCACCCCACGCGGGTGCGTGGATTGAAATC # Left flank : CGAGTATACCGGCTTGCGGCCGGGCGAGAAGCTCTATGAGGAACTGCTGATGGATGAGGAAGGGATGAAAGAGACCCCCTACGAAAAAATCTTCATCGGCCGGCCGATTGATATCTGTCCCGACGATCTCTGGCGCTCCCTCGACGAGATGCGCCCCCTGGCGTACAGCAACCAGCCGGACAAGGTGATTGCCGAGCTGCAAAAAATCGTGCCCACTTTTACCCCCACCCCCAATAAGCACAGTTGAGAGAAGAGCGGCTTGCCGAAGAGATGTCGGCAGGGCCGCTCTTTTGCGTCTGGGTGATGAGCCGGGAGGAATAGAGACTTTGGTGCGAACCCCAAGCGCACAGGGATTTGCCGGGAGGTTCGCACCAAAAAATGTCCGCGTATTGCCGGGGAAAAGGGAAAGGCGGCGGATAGAGGAGATTGATTTGACAGGGTTTTGTGAAAAGGGGTATAGTAGAAGTGTAAATTGGCGTTGATTTTTGTGCCAATTTGCT # Right flank : AAGAAATAAAACAGAGCTATGATTATGTTATCATATCGCACCCCACGCGGGTGCAGTGTGCGACCATAGCAAACCGCCCCTATGCAACTGCCCTTCCCTTTTGTCCCCCAACAAAGAGAGCCCCCGGGTATTCCCGGAGGCTCTCTTTTTACGCTATGGCATCAAAAGGTGATTATCCCTCGCCGCCGTTCTGGTTTCGGGTGCGGTGGATGAGATAGACAGCGGACAGCAGCAGGCTAACCCCCAGAAGGAGGAGCGCCGCCAAATCCCAGGAACAGGCGGCGTGGACGGCGCAGAAAATGGCCGCAGCCGCCAGGGCGGTGAGGACGACAAAATCACAGGTTTTCACGGGCTTTTTCCTCCTCTCTGTCCAGTTGGCGCTTGCGCGCCAGGAGATAGGCCAGGGCGATTGCCGTCAGCACCAGCGCAAGCCAGTGCACCCAACAATCCGCCGGCTGCCGGTGAGCGTGACCGCTCAGTTCGCCGGTATAGGGCCCGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACGCGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 477804-478038 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN908977.1 Bittarella massiliensis strain GD6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 477804 33 100.0 34 ................................. GTCGTAGCAGACGCCTGGGCCGCCGATGGTCACC 477871 33 90.9 35 .........T.T....................A GCCCAACAAAAAATGGGCATGTGTTTTGACTGCAA 477939 33 87.9 34 ..........A.AC..................T GCGGGCTGGCGGCGGTCGGGAGAATCGACACTCC 478006 33 81.8 0 .....G.......CA......C.AC........ | ========== ====== ====== ====== ================================= =================================== ================== 4 33 90.2 35 GTCGCACCCCGCGTGGGTGCGTGGATTGAAATC # Left flank : ATGGCGGCCGTGGCCCTCTACACTATCCGCCGCCGGCGCCGGACCGGTGCGGATGCCGAAAGGGTGGGGGACGAGCGCCCCGGTCTCCTCGGCAGGGACCTCTTCTTTTACAGTTTGGTCTCTGCCCTGGCAGCTCTGCTCTACCTGCTGCGGGGCTGTGTCCTCGACGGCATCGCCCTGTTGGCCGTGGCGGCGGCTGTTGTCGCCAGCGCCATTGCCGTCTCCCGGCGAAAGGCAGAGGGGGAGAGCGAGCACTAGTTGAAAAGGAGCGCCTTTTAGGCGCTCCTTTTTTGCGGGCTGGGGCTTTTTCACAATGCTACGGCTCCCGGTGCGAAGGGCAGGTAAACAGAGTTTTCCCAAGACCTTCGCACCGCATGTGGGCAGTTGCAGGGGAGGAGTGACGGCGACAAAAGGGGCTTTGTCGCTGCAAATTGACAGTATCTTGGGGAAGCGGTATAGTAAAAAAGAAAGAGGATGAAGTGTTCTTGTACTTTGTTGCT # Right flank : CGTCCCATAGCGCGCTCCCGTCACCGTGGTACGCGGATAAACTTTCTAAGAAGTAGTAATCACGGCGGCGAGACAGTTTGCCGTATTCCCCCGCGCCCGCGCCCTTCAAAACGGCGAGAATTCCACATTTGTGAGCAGACCCACCATGCTGCCACCCCTTCCGTCTGAAAGCACCCTTCGAGTTTTTGCCCCGCACGAGAGAGGACGGTACAGCGGGGATTGCCCCCACTTACCCACCCAGCTCAAAGGGGGGCAGGCCACTTGCCTTCGCACCGTGACCAGGTGCGGGTGCAGAGAAAAAGAGCCCTCCGGCCGGAGGGCTCTTTTTTTACAGCTGTGCGAAGATCCGCGCGCCTTTTGTGTTCAGCCACCCCCATATCACCAGGCAGAGGAGGAGGGCGGCCACAGTGGCCACAGCTGTGACCAAGACCATGGACAGGTGCAGGGCAAAACCGAGGCCGATGAACGCCGCGGCCAGAAGGGGAGTGGTGAAGTACCCC # Questionable array : NO Score: 3.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.51, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGTGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 533997-534781 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN908977.1 Bittarella massiliensis strain GD6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 533997 34 100.0 34 .................................. CAAACTTCCACACGCTGCCGATTCTGTGCCCCCG 534065 34 100.0 33 .................................. ATTTTTGGGGTAATTGCATATTCCAAAACAGGT 534132 34 100.0 35 .................................. AGGCCGTACTTTTCGCTTTTTCGACGATCTGGCCC 534201 34 100.0 34 .................................. CCTTCTCCATCCCTTATGACCTTTACCACGCTGT 534269 34 100.0 35 .................................. TGTAATCCCCCGCCGCCCATTTTCGAGATTAGAAA 534338 34 97.1 34 ...........G...................... CCGGTAGGTGTCGTCATCCTCCAGGTCGCTGCCG 534406 34 100.0 34 .................................. AAAAACATATCGGCATCAGGCTGGCCGCGACCAT 534474 34 100.0 34 .................................. CAGAAGATACTTCCGGCCATAAATCTGGCGCATG 534542 34 100.0 35 .................................. AACATCACGGGAGCCGGGGGCAACCCGCACTACAT 534611 34 100.0 36 .................................. CCCGACCATCTGCCCCATGCTCATCTTCACGCAGAG 534681 34 97.1 33 ...........G...................... ACACCGTCGGACATGATCTGCCTTGATGGAATC 534748 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ==================================== ================== 12 34 99.5 34 GTCGTCCCCTCACGCAGGGGACGTGGATTGAAAT # Left flank : CCAGGCGCCGGTCCACTTTCTGGTCATCCCCAAGGCCCACATCGCCAGCTGCGACGAGCTGACTGAAGAAAACAGCGCCATTGTCGCCCACATCTTCGCCACCATCGCCAAGCTGGCGGGGGAGCTGGGGCTGAAAGACGGCTACCGCATCGTCAACAACTGCGGCAAGGACGGCGGCCAGACGGTGGGTCACCTGCACTTCCACGTGCTGGCCGGCCGCTCGCTGGCCTGGCCCCCGGGCTGATTGCCCTGCCCTCGCATATCCCTCGATTCAAAGAGCTGGACGCGTCTGCGTCCAGCTCTTTTGCACGCTTTCCCCCCAATTCGTGGGTGCGAACCCCAAGTGCACATCCATTTGCCGGGAGGTTCGCACCGCAGAATACCGGCCTTTTGCGGCGGAATGGAGAAGTCTGGGAAAAATGGGATTTGCATTTGACAGGATTTTGTGGAAAGAGTATCCTAAAGAGGAAAGCAGCGCCTTGTTTTTGTGCTGTTTTGCT # Right flank : TCCGTGTGGCTGGGGTCCAGACAAGAGCAGGCCGTAGGTCTTCTCTCATTACAGCAGCCAGATTTAAGTTCTGGTGCCGTCTAGCCTTGATTTTTTAGACCCGTAAATACTCCATAGCAGAGACCCGACCTGAGATCGAACTATATAGCAGAATACAACCATAATTATGTACAAAATTATGGTTGTATTCTGCTCTTTATTGCGGTATAATATAATAGCGAAAGGAGCTGATAAAGATGCCGACTATTAGACCCATTGCAGATTTGCGCGACACAAGCAAGATTTCAGAGTTGTGTCACCAAAAAAATGAGCCAGTATATATTACAAAAAACGGTAGTGGACATTTAGTTGTAATGAGTATGGAGACCTATGAGAGACAGCTTGGACTCCTAGACGTCTATCGCAAATTAGGAGCCGCAGAAAAGCAAGTGGAGGATGGCGTGTCTCTTCTAGATGGAGAAGAAGTATTTGGGCGCCTACGTGAGAAGCATGGAAAATGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCTCACGCAGGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 5 896234-895718 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN908977.1 Bittarella massiliensis strain GD6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 896233 34 100.0 36 .................................. AGGATGTCCCCACCATCGCCCCAGAAGACCTATGGC 896163 34 100.0 35 .................................. CGAGTTGCCTCCACTCCCAGTCCAAGCTGCTGCCC 896094 34 100.0 35 .................................. TCCTCGTTCGGGATGTACGGCGCAGGGCCGGGAAA 896025 34 100.0 35 .................................. CCTCCCGCATCCCCAATCCCACCCTCCAGCGTCTA 895956 34 100.0 34 .................................. GGATGCTTGCCCGTGCCACCAAGGTGAAGATGGC 895888 34 94.1 35 .........C.T...................... TTGGCGGCTCCCGCCATCCCGCCGAAAACAATCCC 895819 34 94.1 34 .........C.C...................... CATGGGCTCCTTGGAGATCCCACAGAATAGACTG 895751 34 82.4 0 ..T......C..............A..CCA.... | ========== ====== ====== ====== ================================== ==================================== ================== 8 34 96.3 35 GTCTCGCTCTCACGCGGAGCGAGTGGATTGAAAT # Left flank : AGTTCCTGCCGGTGGACATCTACAAGTCCGGCGCCACCGACTACCGGCTGGAGGACGGCAAGATTCGGCTGCCTTTCAACTGTCTGCGCGGGCTGGGCGACACCGCCGCCATCGCCCTGGAGGAGACCATCAAAGAGGGGGGCTTCATCTCCATCGACGAGATCCAGACCCGCTCGGGCATCTCCAAGACGGTGGCGGACAGCCTCAAGGAGTGCGGCGCCTTCGGCGACCTGCCCCAGTCCAGCCAGATGACCTTTTTCTGATTTCTCCGCCGTTTGTGTGCGCTTCTACTCGGCAGCCCGCCCCTCTCTGGGGCGGGCTGCTTTTTTGTGCGAACCCCAAGCACACATCGTTTCCCCAGGACCTTCGCACCGGAAAATTGGGTAGCGGAGTGGGGGAAGGGGGGAGGAATGGGGGAACAGACCTTGCAGTTTGACATTTGTTTGTGGAAGTTGTATTGTTGTGGTGAAAGAATGCCTGCCTTTTTGTAGGTGTTTGCT # Right flank : CTTTCTGCCGATTTGTGAATTGCCATGCTTCCTGCTTTTTAGAGGGCAGCAGGGGACATCCTACCCCCCACAAAGCACGTTCCCATTCCCCCATCAAAAAAGAGAGAGCCGGACAGCATCACCTGTCCGGCTCTCTCTTTCTTACTTCTTCTTGCGGGGCTGGTTTTGCCCTCTCTGCCCGCCCTGTCCAGCGGGTTTTCCCTTGGCCGCGGGCCGTCCCCCCGGCTGTCTGGCTGCGGACTGCCTGGGCGGAGCGGGGCGCTCCCTTCGGGGGGGCCGGGGCTGTTTGGGGGTGGGCTCCAGGATCTCCATGGGGTAGGGGTGGTTCTTGACCACCGGGATCTCCTGCTTGATGAGCTTTTGGATGTCCTTGAGATAGGGGATCTCGTCGAACATGCAAAAGGAGATCGCCGTGCCGCTGAGCCCCGCGCGTCCGGTGCGGCCGATGCGGTGGACATAGGTCTCCGGCTCGTTGGGCAGGTCGTAGTTGATGACGTGGG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCTCTCACGCGGAGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 6 956741-957730 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN908977.1 Bittarella massiliensis strain GD6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 956741 34 100.0 34 .................................. ATTGTGCCGCTGTAAAGAGTGGGGACAAATCCCA 956809 34 100.0 33 .................................. AAAATTGGGGTTGAAGGGAGAGAGACCGCAGAC 956876 34 100.0 32 .................................. ACCGCCCGGTAGAGGTCATAGGGGATACAGAA 956942 34 100.0 34 .................................. CGTCCTTAGACTGGATACGTCCGGCGATGATTTG 957010 34 100.0 36 .................................. CGCTGGCTGGCGGTGTCCTCGACCAGCCCGACCTGG 957080 34 100.0 36 .................................. TTCAACGGCCTCATCAGCGAGAAGCTGGTCCGAAAG 957150 34 100.0 36 .................................. CTCGTCATCGTCCTGGAGCGCCTGCCACCCCTGCCG 957220 34 100.0 35 .................................. TGATTACCCGCAAATTAATTAAGGGGTGATGCGGC 957289 34 97.1 34 ...........G...................... TCAGCAAGCGGTGCTTCCGCGTCGGCCAAATCTC 957357 34 97.1 33 ...........G...................... ATGCTGACCACAATGTCGGCCAGCTTTTCGCGG 957424 34 94.1 35 ......T....G...................... TTAGATTTGCGAGCCAAGGGTATTGGGCTCAGGAT 957493 33 88.2 33 ....-......G..T...A............... TTCTTTTTTCGGCCCTGGCTGCAATTGGACTAC 957559 34 97.1 36 ...........G...................... ACGGTATTTCGTCACCGACTCGTTGAAATTGTGCGG 957629 34 88.2 35 ......T....G..T..................C GCGATTGCGAACGGCAAAGGCGGCGTAGGGAAAAG 957698 33 82.4 0 ....-......G..TG..A....G.......... | ========== ====== ====== ====== ================================== ==================================== ================== 15 34 96.3 34 GTCTCCCCCTCACGCAGGGGGAGTGGATTGAAAT # Left flank : GCCAGGCAGTGCGCCGGGCGTCGGCCTGGGCGAGCGGGCTCCCCGACATGTCTTTGGCGCGGGAAGGCGGCGGGACAGCGTTCGCCAGACACCCGGTGACAAGACAGTCGCACCTGTTGCGGTGGAGACTGTTGGGAAGGGGCCTTTCCCCACCCCGGCAGCTGTTTTGGCGGCTGCTGTCGGGGGGAGGGGCAACGTTTCAGGCGCGCCCCCTCCCCTTCCATGGGCTGAAGTGGGAAGGCGGCTGCGCGAAGGAAAGGGAAGAGGGCTGGGCGGTGAGTGCCCGGCTCTTTTTCTGTGGCAAGGTCGTCTCCCTTTGCGCGGCGGGTGCGAAGGGCAAGCAGACAGAAAACACCCGGGCCCTTCGCATCGGGAAAACGCCAAAAGCAGGGCGAAAAAAGGGTCGCTCAAGGGGTAGGCGGACAGGGCGGTTGACAGCAGATTGGGAAAGTTGTATGGTAAAGATAATCAAACGGTCTCCTTTTTTGGGGATGTTTGCT # Right flank : TGAGGAGCTAGACCAGTTTGCAGGCCCAGAAGAGAGTCTCCCCCTTGCTCGTGAAAGTGGGCATTGCTTAAAACCCGCTGCCTTGCGTCCCTCTACTCCCGGCTTTCAAGTCCTCTTCTGTTTTGAAAAAGTGGTCGGCAATCGGGCTCTCGGTGGCGCGCCCCTCCCCGCACGAGAAGGGCAACTCGCATCGCGGCTTTGGCCTCGGCGCTTTTGACGGTTTCGCCTTCCCCCTCCCGGGGAGTGGTCCCGAGCTGCCGCTCCAAGGCCGGTGGGCGGTGCCGCGACCCCCACCATCGAAAACGTCCACCAAACCCAAAGAGAGAGGGGAAACAGGCCGTTTCCCCTCTCTCTTTTTGTCGGCAGCCGACCCTAGTCCACCACGCCGGGGGTGCGGCCGATGCCCACCACCTCGCTGACCAGGCGGCGCCAGGTGGCGCAGCCGACGATGCCGTCGGCACTCAGTCCGTTGCGCCGCTGATAGTTCACCACGGCGGTGC # Questionable array : NO Score: 8.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCCCTCACGCAGGGGGAGTGGATTGAAAT # Alternate repeat : GTCTCCCCCTCGCGCAGGGGGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //