Array 1 44200-44349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEJ01000074.1 Serratia sp. Ag2 contig_74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44200 28 100.0 33 ............................ CGTTATTTAGGTTTCAGAACCTGCGGCAATTCA 44261 28 100.0 33 ............................ CTATTGCCTTATTAATTCCATAACTTGCAATAG 44322 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAGGAACAACTTTGTATTGATCTTGCATTTTCCCTCACTCGAGAAATGGCTGGCCGATATGATAAACACAAAGTCTCTGAAACATTCAGGAAGCGAGTCATTGCCATGGATTTGCTCAATCAGATCACAGTTGATGTTAATGATTTGATGGGGGTTAAACATGCTCGTCGTACTCGCAAATGACTTACCACCTGCTGTTCGTGGACGTATGAAACTCTGGTTTATCGAGCCTCGCCCGAACGTGTTTGTATCTGGTGTAAAAGATTCTGTTGCACAAACAGTTGTTGATTACTTGATGCAATATTCTCCGACAGAGTCTGGTCTTATGCTGTTTAGAAGTATTCCTCAACCGCCAGGCTACGAAATTCGTTACAAAGGTGAGATCAGAAAACCAATTACTAATATCAGCGGATTACAACTCATTATTGAAACCCTGAAATCCCCATAATCTATAAATATGGTGTTTCAATTATCGCTCTTTCACAATATATTGGT # Right flank : TCAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49542-49271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEJ01000013.1 Serratia sp. Ag2 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49541 28 92.9 33 .T..................A....... CAACAAGCTTCCATACGAGAGTGCGCACTGTTT 49480 28 96.4 33 ...........A................ TGGCTGACAGGGGCACGAACCTGTCCATACCGG 49419 28 100.0 33 ............................ TTGGGTCGTTTTCCCCACCCCGGCATAGCCCTG 49358 28 100.0 33 ............................ TTGGTCTCGTTCGGCAATGTTGTTGATGGTGTT 49297 27 78.6 0 .T...........T..C....-....AG | ========== ====== ====== ====== ============================ ================================= ================== 5 28 93.6 33 GCCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : CGCACGTGGGGGTGTTTCCAAGCCGCAGCCAACCGCCAGAACCACGCCGC # Right flank : TCAAGCATGACCAAAACCACCGTAGTAACTACCCACCAAAATACGGCTGTCGCAATGACAATGTGAAATAACCTGGCACGGGAGAGTAAGTTGTTCATAGCAACCTCACAGTTTCAACGAGTCAACAGACCAAAACTGCCCTTTAAGATTAACTTTAGTTCGGCACAGCTATTTTTATTTGCAGCAGATCACTCTTTCATTAAATGATAAAAATTTGTCAAAGAAATGTTTTTCTCTCGCGGTATTTTTAACATCAACCAGAGGGCATCAAAGGTTAAAACAAAGTACTGCGCGGAACCTCTATCAGCAGCATACCGGCACGCAATCCCAGAGCGACGTTAGGGTTAGGGAACAGAATCCACTCTTTATCGTGCTGTACCCGGTATGTCTCCCCTGGTTGATCACACAATACCGTTCCCCGTGGCAACTCGGTAAAGTTGGCGGTGTCATCACTCAGATACAGTTTGAAGGCTTCACTGTGCTTAATCAGCGACTGCTCA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37233-36306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEJ01000009.1 Serratia sp. Ag2 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37232 28 100.0 32 ............................ TAATTTACCAACTAAAATAACTTTATTTACGC 37172 28 100.0 32 ............................ TTGATGGCTAGTAGTTTATTTTCTTGCAGCAA 37112 28 100.0 32 ............................ ATCGCCATTGCTTACCGTAATACCAGCATGAT 37052 28 96.4 32 ..........A................. TACACGCCGATTGTAACTAAAGCGGAAGAAAC 36992 28 100.0 32 ............................ TGCTCAAATATTGCTGAAACCAGCCGGTAAAT 36932 28 100.0 32 ............................ ATTAGGTGATGCAGCAGTAAGGTCAAGTCCAG 36872 28 100.0 32 ............................ AACTGGCTAAAACCGACTCGGCCGTCGATCTG 36812 28 100.0 32 ............................ GCAATGATGCTCGGCGGCGTCGTTCAGATGTT 36752 28 92.9 32 ...........CG............... AATTCGAGATAACGTGCGCCCTGGCTGCAATT 36692 28 92.9 32 ...........CG............... CGTGACGGCACAGGCAGCAACAGCGGTGGTGA 36632 28 92.9 32 ...........CG............... ATTCTTTATCAGAACCGCCGCGAGTTTAAATT 36572 28 92.9 32 ...........CG............... TCCAGCCAGCGCAATTCCGTTTTCACTTGGTC 36512 28 92.9 32 ...........CG............... ATAGCAAAAACTGGCGAACCAAGTTCTACCAA 36452 28 92.9 32 ...........CG............... TCAACAACCTGCTGACCACATGCCAGAGCAAT 36392 28 100.0 31 ............................ TTAGAGGACGCGCTCTAGAGCGGTAACCCCC 36333 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 96.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCCGAGGACGGATCTCTGGGCGGCTACGGCATACCCAAGTCACGCTGTTCAAAGCCACACAGATGTCTTCTTATTATCAGGCTTTGGCTGGCGATAAAGTGGCGAGGTTTGGTGAGGACAACGGAGTGGGCGCGGCGTGCGAACAGTTGAACATCGTCCCGCTTGCGTGCAATCACCACAGTATTATCGAACGTGTCAGCGAGATTTGGGCGGTGATAAAACCGCAGCAGTGATGATGAGGTAATGCCACCTTTCTTTATTTAAGAGCGGTGGCATAGATACCCAAGCAACTTGAAATATGAAGGGTATAGAGGGTTAACGAGAGGATATTTCCCATAAACGAATGGGTAAATAGCCAAGATATCGTTGACCCTCTTTTTTTGCCTGCGAATAACATATTGATTTTAAATGGGTAAAAGAAGGCGAGAGAAAAAGGGTTTTTTAGCCTTAAGTGAGGTTACTCAATGATAGTTAACGCGATTAGCGCTATGCTTGAACG # Right flank : CAGGGAAGGTCGCTGCTTGGGTATTGGCTGCGTTACTCGCCCCTGCGGGCCAGTGCCAGCGCTGTTCAAACCGGTCAAAGACCGGTTTGTCACTCAGTTGCTGCCTACAAGCAACTCGAATTATTTTGGGTATTTACCTGGGTTCTTGAACTTTAACTACCGCAACAGCTAATAATCGTAGCGCTACGATTGTTTCTGGAATATGCTTTCCGTATAATTTGCAGCGCTACGATTTAACACCGTGGTGAAAAATCCGGGTGCTGATCCCTAAACCCTAGAACGGAGGCACGTATGCCCAGCGAACATTCCCACCACACTTTTGCCAGCCGCTTGAACGGCTTAACTGCCCCGATTGGCACATGGCTGATGTCGGCTTCGGCGAGCACCGCTGAAGCACTGGGGTACGCAGGCTTTGATTGGCTGTTGGTGGACATGGAACATGTGCCGATCGAATACCGTGACCTGTGGCATCTGCTTCAGGCTATTCAGTGCGGCGGCGC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 68869-67281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQEJ01000009.1 Serratia sp. Ag2 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68868 28 100.0 32 ............................ AAGCAGCTGAAGCGTTGAAGCTGATGGCCAGC 68808 28 100.0 32 ............................ ACTATGAGGCGATTAACTATCTCTTTCGCCTC 68748 28 100.0 32 ............................ TTGCCGCCAACCCTGCACGGTATAGGTCACCT 68688 28 100.0 32 ............................ TGCGTCGGGTGAGCAACCTCTTTGCTGCGTTT 68628 28 100.0 32 ............................ ATGACCCAAAAATATGACTTTAAAGCGCTGAA 68568 28 100.0 32 ............................ TTCCGCCACGTCAGCGCCGATGGCGTAATCCT 68508 28 100.0 32 ............................ ATCCGATGGCATGAGTTCAATTCCAGGACATA 68448 28 100.0 32 ............................ GCCATGGAACGTGCGGGCGGTCGGGCTTATCT 68388 28 100.0 32 ............................ TTGCAGGTAGAGCGGGTTTGGTTTGATGCCAT 68328 28 100.0 32 ............................ TTCAATACTCTGGTACTGGCGAATCATGTCCA 68268 28 100.0 32 ............................ TGCACCCGGCGCATACGTTCCTGAATGACCGG 68208 28 100.0 32 ............................ AGATTGACAGTGATTTCCTGATCCCCTCTGAT 68148 28 100.0 32 ............................ ATTCAGGTATTTAGCCTGTGGAGGATTTGACT 68088 28 92.9 32 ...C........A............... AGAGTATTTTGGGCCACCAGCACCAACCAACA 68028 28 92.9 32 ...C........A............... TACCTGCTGAACAGGCGAGAGCAAATAAAGCG 67968 28 92.9 32 ...C........A............... TTAACTTGCTGCGGCGTTGCCTTTTGCAGACC 67908 28 96.4 32 ...C........................ ATAAGCACTGCCGAGCAAATGCTCAGGTTGCT 67848 28 96.4 32 ...C........................ GGAGATTGCTACAGCGCCAGATATGACTGCGC 67788 28 96.4 32 ...C........................ CGGTTGGCTCAGGGGATGGGATATCGAATAAC 67728 28 92.9 32 ...C........A............... AGCCAGTGGCACGCGCGGTAATGACAGTCCGG 67668 28 92.9 32 ...C........A............... TATCATCGCATGGATTGAACACGGTGACATAA 67608 28 89.3 32 ...C...AT................... CATGCCACCCTGCCCGTGGCCGATGATGTGAT 67548 28 92.9 32 ...C...A.................... GTTAAAGCCCGTCTGCCCAATGCGAGCAATCA 67488 28 96.4 32 ...C........................ TCTCCCAGACGGGAAAAGCTGAATCGGCTATG 67428 28 92.9 32 ...C........A............... CTGAACTGGTCCGGGCATTTGCAAAAATCGGT 67368 28 92.9 32 ...CA....................... TGAGACTGACGCTTTCGAGCGGTCACACAAAC 67308 28 85.7 0 ...C........A.............GT | ========== ====== ====== ====== ============================ ================================ ================== 27 28 96.4 32 GTTTGCTGCCGTGCAGGCAGCTTAGAAA # Left flank : TGCAGGATATTGAGCATCTGATGCAGCAAAGTTGGTTACAAGGCTTGCGTGACTATGTTCGCTGCAGTGCGGTATTGCCAGTGCCTGAGGCGGTGCAATACCGCACGGTGAGGCGAGTACAGGCAAAAAGCGCTCATAACAAGCGGCAGCGCTCGATTGCCAAAGGGTGGTTAACTGAGCAGCAGGCGTTTGAACAAATACCGGATACCCAGCAGAGATCGCTCCGGTTGCCGTTTATTCAACTGCGTAGCCTTTCGAACGGCAATACGATGCGAATTTATATTCAGCATGGTGAATTGCAGGAACAAGCTCAGCCGGGGAATTTCTCTGCCTATGGTTTAAGTAGCAGTACCACCGTCCCCTGGTTTTAACCCTTTTTTTGCCACTATTGCTAACTGATTGTTTTGTAATGGTGTAATGAGAGGGCTAGAAAAAAGGGTTTTCCAGCCAGTGCTCTGATTTATGTTTAATAAACAGGGTACTGGCGTATTTTTATTACA # Right flank : CTAAACTCAGGGTTGAAATTACGTCTGTTATTTCTGGTCATTGTGTAATCTGTTTCGATAATGAGGTGATGAGATCACCTCTATTCAGGTGGCCAAATTCAGTATTCCACTTCACAAGGCCATCTACATGGCCCGGGGCAAAAAGTGATTTCTCTGGTGCTGGAGTTGGTAGCGAAAAATGGAATATACCGATTCAGAACTGGCGGTTACACAATATTACGGGCAGGCTCAACTCTGGTATCTAGAATTTTACTTGCCGACAATATCATACTGCTCCACATGACTAATAAAGGCTCGTAAGCGGGCAGGGATATAGTTCTTGTCTCTAAACATAAGATAAGTTGGTCTAAGCCCGCCATGCCAATCCGGCAATATGTGTACCAGTTCCCCATTGTCAATCAGTGATTTAACAAATTGAAAGGGTGCTAAACAAATCCCCAAGCTTTTCTTTGCCGCTCGGATAACCAACTCGGTATCATCCACCACCATATACGGGGTGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : GTTCGCTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //