Array 1 2226040-2225158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQL010000005.1 Cronobacter turicensis strain HA18016 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2226039 29 100.0 32 ............................. GGAGATCCTCGCAATCACAGTCAATGCCGCGG 2225978 29 100.0 32 ............................. AGTGAATCTCTGTCTGACAGCAAACGTCGATA 2225917 29 100.0 32 ............................. TGCACGCTTTTCGCGGGCGCGTTTGCGCCAAT 2225856 29 100.0 32 ............................. TGTCCACGCGTTACCCCTGCGGCAGATCGTAG 2225795 29 100.0 32 ............................. TACCCGGAGTTAACCAGGGCAATTAGAGAAGC 2225734 29 100.0 32 ............................. TCAGAAATCGTACTCAATTTTCTGAACGTGCG 2225673 29 100.0 32 ............................. TGTTTTTTGGTTTTTTTAGTTCCTTACTTTCG 2225612 29 100.0 32 ............................. ACGAAACGGGAATAGTATTCGCTCATTGGTTG 2225551 29 100.0 32 ............................. GGGTTAAATCGCCACCTCTGGGAAACGGCTCA 2225490 29 100.0 32 ............................. AGATTCGCTTAACGCGCATCCGGCTTTTACGG 2225429 29 100.0 32 ............................. CGCTGCGAGTAATCAAACTGGCCTAACTGGAT 2225368 29 100.0 32 ............................. ACGAGTCATCTCGACCTGTGCCTGTTACTGCA 2225307 29 100.0 32 ............................. CGGTCAATCTCGGCGATGTACGCCTCTTTAAA 2225246 29 96.6 32 .............G............... GACTCAGACTATCTGATCATCTATCGCGGCGT 2225185 28 75.9 0 ........T...TG.......G-..CT.. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCGGGAGAAATTGAACCGCCGCAGCCCGCGGCAGATATGCTGCCGCCCGCGATACCACAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCAAGCTTCGCGGGCGGCTCGCCATCTGGCTGCTGGAGTTGCGCGCCGGGGTTTACGTGGGGGACGTGTCGCGCCGGGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTGGACGGCCTGCGGCTAGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAATAGTTCTTTAATAATATGAAATTGTAAACCAAACGTTGGTAGGATGTTGACTGCCAAAAAAGAGTAATAAATACAGTAGGGTAGTTTTAGA # Right flank : GTATATCAATAATGTGGCTTATTGAATATGTGCAGGAGCATTATTTTATATGGCAATATATAAACATTAATTCTGAGTTGGCGCATAAAGATAACGGCAATGGTTAAAGAATTAAAATGTATTGCATTGCTTCTATTTCTGTTGATTATAATCAAATGATTTTTATTGGTGGTTTTTATGTTTGTTAACTTAGTTTCAATGTTAATTACAGTGTTTATTAAGTTCTACATGTAGAATTTATACGTTCTTCAGTTAATAGGAATGTATAAATGATATGGGATAAGTATGCAGCAATACGTCATGCACAGGATCGCGCCTACAGTAATAGCCATCATAAGTGCGAGTTATTTGTTAAAGAAGCTATTATTGCTGGTGGGGTTAATATACATCCAACACCTTCTGCAAAAAATATGGGTAAAACATTGATTCAAGCCGGTTTCTATGAGGTTTATGGTGAGCCCGTAACTGGTGATGTTGCTGTTATTAGCTCGATCCCCGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2254168-2252736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQL010000005.1 Cronobacter turicensis strain HA18016 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2254167 29 100.0 32 ............................. GCCTCCGCAATCCCCGCCGAGGCGTTACCACC 2254106 29 100.0 32 ............................. TCAGGTCATGGCCCGGGCGGTGGACGTGGTTG 2254045 29 100.0 32 ............................. ACCCTGGCCTGGTCAGGCACGTACTCGATAGA 2253984 29 96.6 32 ............................T GATACACATTTGCTAAATATACACGTGTATAT 2253923 29 100.0 32 ............................. CCTGGCTGCACAGCTGCGACCCGTATCACAAC 2253862 29 100.0 32 ............................. CTACTGGCTTGCACCTTGTGCCATCCTTCCCG 2253801 29 100.0 32 ............................. AGCGCTTCTTCCAGATAGTCGAAAATTTCCTG 2253740 29 96.6 32 .....................T....... CGCCAGCGGTTTAACCGCCGCTTTGCGTTTGC 2253679 29 100.0 32 ............................. GAATTTATTCTGTTATAACGGAGTGGTGGCCG 2253618 29 96.6 32 ..........T.................. AACTGGACGACCAGCGAAAAGCCGGGGAATAA 2253557 29 100.0 32 ............................. TGAATCGGGGTACACGAATGAACGCCGCGCCC 2253496 29 100.0 32 ............................. TCGGACGCCGGTACGCTCATGCCGTTCTGCTC 2253435 29 100.0 32 ............................. GGGCTTAAGGAAAAAGCGTTGATGGCCGGTGC 2253374 29 96.6 32 .A........................... CCCTTACCCGGCACATACGGAAACACACTCAA 2253313 29 100.0 32 ............................. CCCTCAAATACTGCCGCGTGCGGCGCTACGCC 2253252 29 100.0 32 ............................. CGGCTACATTTACCAGTCCATTGACAACGCCA 2253191 29 100.0 32 ............................. GGGCATTTGGCCGTTCTGCTATTTCTGAGAAT 2253130 29 100.0 32 ............................. GCAACCATCATCTGGAAAGAAGCAAAAGGCAC 2253069 29 100.0 32 ............................. GTCAGCCACTTTAAGCTCCACGGGCCTCGCAT 2253008 29 100.0 32 ............................. ACCATTAAAATAAAATAACTCAGTTCGCTCAC 2252947 29 100.0 32 ............................. CGTCCAGCACAGGCAGCAGAAACGGCAGCAGT 2252886 29 100.0 32 ............................. GCCGGTGTTGGTGCGGTTGCGTTTTCTGTACT 2252825 29 93.1 32 ......A..........A........... CATCTCCTTATCCTTCTGGCGCTGCTGCGCTG 2252764 29 93.1 0 ..........................A.A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.9 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAATAACATCGCGTTTATCGTCGTTAACATCAATATCAATTACCGGCGGCCCGCCGTGCTCGGCGATCTGCTGACCGTCACAAGTCAGGTGAAACAGCTTAACGGTAAAAGCGGGATACTAAGCCAGGTCATCACGCTGGAGCCTGAAGGCGAGGTCGTCGCCGATGCGCTCATCACCTTTGTGTGTATCGATCTGAAAACTCAGAAAGCGCTGCCGATTGACGGCGAGCTGCGTGAAAAACTGGAAAAACTCACAGGGTAAATTCTGCAATAGCGGTGTCTGTGCCCGTCATCGTGGATTTATCGCCGCTGAAGATAAACAATCCGGTAGATGTTAACGGCCCACGAGCGTTGCTGAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTTTGTGGCGATGAAAGTCCATTAATTTCAGTAGGTTATATTTAGT # Right flank : AACTTTGTTGGCTGTACGAACAGCGCGACGCTGTCAGCCCCATTTCCCGCCACATTCTTCAGCACCGTTTATACTTCAAAGCCATTGTTCAATTTTAAAGTCTGCGCAACAAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGCAAAGGGTTGCACGCGCATCTCATCTGCCACTGCCTGCTTATTGAAACTGAACATCACGGGCTGGTGTTGGTGGATACCGGTTTTGGTTGCGATGATATGCGCCACCCTGGACGCCGTTTGCCGCTCTTTTTCCGGGCGCTGAACAATATTCAGTACCGGGAATCATTAACGGCGCTGCATCATATTAAGGCACTCGGCTTTAAGTCGGAGGATGTCCAGCACATTGTGCTAACGCATCTGGATTTTGACCACGCGGGCGGCATCAGCGATTTTCCGCACGCGCAGGTGCATTTGATGCAACGGGAAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //