Array 1 31458-32349 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRLH01000183.1 Cyanothece sp. BG0011 unitig_229, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 31458 36 100.0 36 .................................... ATTCCTTTATCCTGGTTTGATAATTCTTTTTCTATT 31530 36 100.0 43 .................................... ATACTCCGATGAATCTAATCTAAAGCTGGTAAAAAGTTCGTGA 31609 36 100.0 43 .................................... ATAGAACCCTGATTTTTGTGGGGTTCTTGAGTTTATAATCGGT 31688 36 100.0 50 .................................... GTTCCCAGTAGGGGTATTAGCGGCCACTGTTGCAGTTATTTGAATATCTG 31774 36 100.0 44 .................................... GCGTTAAGCCGTTTCGTCTCAAAGCTTAATTGAGACTCATTCAG 31854 36 100.0 38 .................................... TCGGAAGTGATGGACTCTTCAATAAAGGTTCTAGGAAT 31928 36 100.0 35 .................................... TGCATCTTCTAACGTAGCTGTTGTAGCAAACTCGT 31999 36 100.0 37 .................................... GAAAGCCTCGACTTACAAGAGCTTACATTTCTTTTAA 32072 36 100.0 40 .................................... TCCATCGCTAGATAAACCCTTTCTTTAGGGTGAGGAACAA 32148 36 100.0 52 .................................... CTTTCCAGAAAAAAGTAGTTGTTTTGAAATGGTTTTAAAGTTAGAGTTTTTG 32236 36 100.0 42 .................................... TAATATCAGAAGCATCGTGTTTATGGTTGGAATAGAACTCAA 32314 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================== ================== 12 36 100.0 42 CTCTCTTTTTATAAGAGAACTTAGTTGAATGGAAAC # Left flank : TGAGTTTCCTGAACGTGAACCGTCTCCCTCTTTAGAGTCTAGCAATTTTGACTTAGATTTGTATGAAACGAGAGTCAGACAACTCAATGATGCTTATCAAGATACAGATTATAACTTCGGAGACTATGACCGTCCTACCCGTCGTTTTCCTTTAGTTGATTTATAAGTTATTGCGAGGGGGAAACTTAACATTAACCTTTGATTCTCACTGACAAGTTCCCGAAGCAATCACCACAAATAACATTAAAGGAGACTGTAGGGGCATAATATATTATGCCCCTACGAATTTTTGAGAACTGAGCTAATTTTGTATCATCATCTCGCGAGGGATAAGCAAAACCGCCGTAACCCTAATGATCTCGTTCTAACCCTCGCACCCTTGTCTGATGCGGATTTCAGCGATTTTACGGAGGACTTTTTCTCGTTCTAAGACTACAATAAAGCTATCCCTCGCAAACCGCCTCTAGACTCTAGTCAGGATAGGGGTTGTGAAGCGAACC # Right flank : CGCCAACTCAAACGTTTTTTCTCCTTTCTCCCTGCTCCTGCGCTCCCTGCTCCCCTGCTTTTACAAAAGAGGTTTATGGCAATCGGATTTAGTATTGTATCACCCCTCGCAATGACTAATTAACTTTATTACTTCTATAAAACCCATCGCATTATTTATATTGTGATGGGTTTATAGTGTTTCCTAAACTCATAAGATACACCTAAAATTAAATTCCTGACTCCTGACTCGGTGACTCCTGACTCGGTGACTCCTAAAACTAGAAAACTTTGCACCTCACAAGTATGTAAACTGCTATATTTTTTTCAATAACATTCGGTAAACCGGCTCATTTTTATTAAAGGTTGCGATTTCTCTTTGCGTCGCAATCGGAAAAGGATTTTCAGCTAACCATGTTTCTTGATGCTGCTTTTGAAAACAAGTATTAGCTAAGAAAGTTTCTCCCATTTCTTGGGCCACTTCCTTAATATCTGATTGTAAAAAAACAGATCCATTATCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTTTTTATAAGAGAACTTAGTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 92461-91404 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRLH01000046.1 Cyanothece sp. BG0011 unitig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 92460 36 100.0 41 .................................... TAGGCAATATATTTCACGAAAAAAACGCACAACATGGCCTT 92383 36 100.0 46 .................................... ACCCAACTAATGGGCAGCTGGCACAAAAAACACCTGTAGGTATCAA 92301 36 100.0 44 .................................... GACAGTCTTGGAAGGCTTATCAAGCAGGGAAATATCCTTACCTT 92221 36 100.0 45 .................................... TGCCAACATTAATTCTATCCGTGAGCTAGTTGCAACTCTAGACGA 92140 36 100.0 38 .................................... ATCAAGGGTGTTATGAACAACGTATTGGTGTACGCCGA 92066 36 100.0 44 .................................... ACTGGATTACTTAAAGTGTTGGGAGGAGTGGCAATAGGGATTAT 91986 36 100.0 43 .................................... AACAATTGAATTAAAATCATCAAATGAAAGTTTGAAGAAAAGT 91907 36 100.0 41 .................................... CTGCTTGACGATTATTCCCGGCAAAGCTGTAAAGCTAAGTG 91830 36 100.0 42 .................................... AGCTACCGCAGCTAAAGTCACCTCTAAAGGAGACCAAATGAA 91752 36 100.0 42 .................................... TGATTATCCAGATAAATACACTGATGAATTTATTAATCGTGA 91674 36 100.0 39 .................................... TTTTACTGTAGATCAGCGTTGTGATTTCGATCAAGATAT 91599 36 100.0 44 .................................... CAAGAAAAGCAGGAGGCGTTTTAATGAGAATTAATCAAAAAGGA 91519 36 100.0 44 .................................... AGTTATGGGCTTATGCCGTAAACAATAAAAAAGAAATCAGGAAA 91439 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 14 36 100.0 43 GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG # Left flank : AAAAAGCAAAAGCAAACAGTTCGATAGAATATTCTTCGACGGAAAAAATAAATAAAATTGTTAGAAATAGACTAAAAATTAGATGGCGAAAATAATAGTCTAAAGAAAGACCACCGAAGGTTTTTCTTAAGATGGGATCAATCATTTTTATATTAACTCAGTAGCTTTTTATCGGTTATAACAAAGTTATTGGTAACGGGTTATATTCTTAATAGTTTTTTTCTTTTCTGTTAGCAGTTCTCAATTATTGCTTATTCTCTTTGCTCTAATTGTAAGAGTCTCCGAGTCAGGTTTACACTGAGCAGGGAGCGCCGGAGCAGGGAGCGCCGGAGAAAAAACGTTACTCTACTAAAATAAGCGGATTTGGTATCAGGAGTCAGGAGTTAAACATTAGATGTACCTCATGAGTCCGAGAAACACGATAGACGATAATCTTAAGATAAAAAAAGGGGTTTAAAGTCCCCCGTTTGTTAATATTTTACAGCTTTGCCTTCCCAACA # Right flank : GGTACTCGCTGTAACCCCTATCCTGACTAGAGTCTAGAAGCGGTTTGCGAGGGATAGCTTTATTGTAGTCTCAGAACATAAAAAAGACCTCCGTGAAATCGCTGAAATCCGCATCAGATAAGGGTGCGAGGGTTAGAACGAGATCATCAGGGTTACAGAGATTTTCCTTATCCCTCGCAAGCTGATGATACAAAAATTAGATCCTCGGTAGGGGTTAACGGCCGTTAACCCCTACAAAATATTAGGCCACGAAACCAGAACAATTAGACAATGGTAGACGACGGGGGTTTTGTGAGGTCTTTCCCTCCCCAGAGTTCAACTTGTCCTAATGTATGATCAGAAATAGGATAAAAACGGATGCTATCCTCATCTAAGTTGACTCGTTCCTTCATGCGGCTGCATAACTGTTTATATTGCGCTTTAGTTAAGACACATTCAAACACCGAATATTGAACCCGTTGGCCATAGCCTTCGAGAAGATCAGACACTTTTTTACGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 35755-34991 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRLH01000052.1 Cyanothece sp. BG0011 unitig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 35754 37 100.0 35 ..................................... TTTCCTTGACGTAATGATTGAAGAAGAACTAAATA 35682 37 100.0 38 ..................................... ATTTTATCCCATCTTCAAAAGCAAATTGTTGAACTTAA 35607 37 100.0 35 ..................................... TAGACTTGCTTTATTGTTGTTTGATTCCCAATGAT 35535 37 100.0 34 ..................................... TTCTTTAGATTTGTTTTTGTCATGAGTTTCTATC 35464 37 100.0 34 ..................................... CAGTCTGCTTTGTTTGGTATTCTTTGTTTATCTT 35393 37 100.0 35 ..................................... TGAACCTGGAAAGTGCAAAGGTACTCACGCCTGAT 35321 37 100.0 36 ..................................... TTTTTAGTATGATATTATGGATTTGTAAAAACTAAA 35248 37 100.0 37 ..................................... TTATAGAGTGACAGGTAATGATTCAGAATATAAATAT 35174 37 100.0 34 ..................................... CCCACGGACTACTGTTGCCACCACTAATCCAGTT 35103 37 94.6 37 ..........................A.A........ ATTACAACGGAGTCCCTAGACCCAAACTAATTCTTAG 35029 37 81.1 0 ............G.....G.T..G........CCT.. | G,A [34994,35000] ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 97.8 36 GTTTCAACTATTAGTAATCCCTATGAGGGATTGAAAC # Left flank : GAAACGGTTGTGCGAAGGGGAGAAAGATGAGGAACCG # Right flank : AGTCAGATTTACCGCTCAAGAATGTATAAAAAAAACGGCTGAGGTAATAACTGAATTCCTAGGAATTTATTAAAAATTTATTTTATTAAAAATAGAAAATTACCATATTAAATATTAAGGATAGGCTCAAGTAAATCTATATAATACTGTTGTTTCTCATCTAATTGTTCTTCAGGAAACTCATGATAATAAACCCTGTAAAAGAGTGTTTCTTTGCATCTATCTAGTTGGGAATGAAGATGATGTTTATCTCCTATCCAGCTAGAACGTAGATTTTTGGCTTGACCAACATACCAGACAAAGTGTTGGCTATGTACAGCAACTTCAACGATATAGATTCCTGAGAATAACGGTAAACGATCTACATACATAAGTAATTTAGAAGACCAACTCGATATAGCAGAGAGAGGAAATAAATTACTTTGTGTGTCTAATGTTTTTTTCTTGTTTACTTGTGTTAATTCATATTCATTTTTAAATTGTTGTTTTTTTGAGCGACT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTATTAGTAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 31922-32343 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRLH01000193.1 Cyanothece sp. BG0011 unitig_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 31922 36 100.0 38 .................................... TTGAATTCCTTTTTTAACTTTCATGTATTGTTTACCAG 31996 36 100.0 40 .................................... TTGTCTTGTCTTCTAATAGCTTTTTTTCTTGTGAAGCATA 32072 36 97.2 43 ..........................G......... TTTTGAAGCCAATAAGCAACACCCTGATTGGAAGGGTAAAAAA 32151 36 100.0 39 .................................... TAGAAAATAATAATGACTTTCAAAACCTTAAAACTTTAG 32226 36 100.0 46 .................................... AACTTAGCTCCTGAATTAGCTGCTAATGTTATTGAAGATTTAATAA 32308 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 6 36 99.5 41 GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG # Left flank : TAATGTAGCTATTGTAGAACCAAATTATGGTTACTATTTCCACCCCGATCCTGAAGTGGAAGGCGATCCCACAGGACAGGTTTTATATCAAGCGTTAAGCGAACTTAACCAAGAATACGGGGTTAAAGAGGCGATGATGGTTCGTTTTGAACGTAAAGGATATATGATCCCTAATTTATACGTTTTTCTCAAATCTAATCAACCTCAACAAACTTTAGCCGAAAGTCAATCTCCTGATCAATTATCGATGTAATCTGAGTTTAGAATTGTAGGGTGTAGGGGCATAATATATTATGCCCCTACCAATTTTTGGGTTTCACGTTATGTAATCAAAAAAAGAATTAATTTCTATTAAAATAAGTATCCTAAAAAAGCATAGGATACTTATTTTTTTACCTTTATTGTAGGGCGATGCACTCCCCACCTTACTAATGTCTCTTATAAAAAGAGAGTTACTCTGTACCTTTCAAACTTCAAACCGACAAATACGAAAAAGACGA # Right flank : GGGTACTCGCTACAACCCCTATCCTGACTAGAGTCTAGAAGCGGTTTGCGAGGGATAGCTTTATTGTAACCCAAAGCCCTAAAAAATCTCTCCGTAAAATCGCTGAAATCCGCATCTAGTAAGGGTGCGAGGGTTAGAACGAGATCATCAGGGTTTCAGACATTTTCCTTATCCCTCGCAAGATGATGATACAAAATTCTTGAACACAAAAAATTTAATAGGGTGTAGGGGCATAATATATTATGCCCCTACCCATTTTTGTATTTCACTAAATTGCAATGTATGGTCACAAATTTTATCGAAGGTACAGGATCTAAGTATAAAATAGAGAAATGACGTAATAAGACTAGGGTAAAAATTTGGACAGTAGAACGGAACTAAAACAAGAATTATTAACTAAAATTGAACAACTGAAAACCCCCACAGACATTAAACTGGGTTCTCCTATTACGGATGTTCAACTGAAAGATACCATTAGTCAAGAAATTGAGCAATTAACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAACTAAGTTCTCTTATAAAAAGAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 462-62 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRLH01000027.1 Cyanothece sp. BG0011 unitig_147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 461 37 100.0 34 ..................................... TGAAAATATGACCAGCGATGGCACAAACTTAACC 390 37 100.0 37 ..................................... TAACTGGAATATCACCGACGCTGAACTTGATAGAAGC 316 37 100.0 38 ..................................... TTTGACTTATAGCTTACAACTAAGTGATTTAAACTATC 241 37 100.0 35 ..................................... AATGCTTGATAATACAGGAGATGAGAAAATAAAAA 169 37 100.0 34 ..................................... AACGAGTGGTTTATTCAAGGTTAGTGCCTAAAGG 98 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 100.0 36 GTTTCAACTATTAGTAATCCCTATGAGGGATTGAAAC # Left flank : TGTCTTAGTTAGTTACGATATCACTGAAAATAAACGCCGTAATAAAATTCATGAGATTTTGAAATCTTATGGTCAATGGGTACAGTATAGTATCTTTGAATGTGATTTAACTGAAACTCAGTATGCTAAACTCAGGCATCGGTTAAGTAAATTAATTCAAGGAGACATGATAGTATTCGTTTTTACTTCCTTTGTCAGTGTTGTCAAGGTAAAATTGAACGTATTGGTGGAGAAATGCCCAGAGATAATACTATTTTTGTCGTTTGAGATTTTTGCGCTACGAGGTAGCTGTACAAATGAGTAAATTTCTAAAATGACCTTTAACCCTTATGAGGCCAAGCTTAGAGATTATTTCTCTCTCTAAACCTCAAGCGCATCAGTCACAGCAATGGTTTCAGCGATTTTATGATATGATAGATAAAAGTCAAGCCCAGTTTTTTTACTCTGAAGCGCAAATGTACCTTGAAAACCTCATAATATATGGCTTTCAGCGTACCGCC # Right flank : CAAGGTTCCTCGTAAACCTAAGACTTTACTTGCTAAGGTTTCAACTATTTAGTAATCCCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTATTAGTAATCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 8081-8491 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRLH01000212.1 Cyanothece sp. BG0011 unitig_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================================================================== ================== 8081 25 100.0 56 ......................... TTATTGGAAACTCTGGTAAAGAATCCAAAGCCATCGTTGTTGTTTGAAATGGACTA 8162 25 100.0 84 ......................... TCGTTGGAAACAATAGAGCGTAAATAAAAGGAAAATCTTTATCCGTCATCCATTTGGTAGAAAAACCGTAGTTTTTGATAACCT 8271 25 100.0 51 ......................... TTGTTGTAAACTTGTAGTTTTCCTTTAAGTTGAAAATGATTGCAGCCGTTT 8347 25 100.0 95 ......................... TCCTGAAAAACTGCGCTCAACTGCGATTAACTGCGATCGCTGATAAAGTGATTAACATTGGTCACTGATCACTGTTTACTGTTCACTGTTCACTG 8467 25 96.0 0 ....G.................... | ========== ====== ====== ====== ========================= =============================================================================================== ================== 5 25 99.2 72 CCTTACCTATTAGGTTGAATAGGAA # Left flank : TTATAAAGCGCAACAATATGGTGATAGTTTTGTCTCAGAAATTAGGGAGTTTTGTCAACAGCAAAGTTTACCCATTCCTTTACCCACATCTAGCAATATGATTACCTTACAATTGTATCAACAAGGGTTAAGCGTTCCAGAAATTGCCGAGAGACGAAACTTAAAAGAATCGACTATTTATACTCATCTTGCCGAATTAATTGAAATGCAGCAACCCATTGATATTAATCAGTTTATTTCAGAAGAGAAAAAAGCTAAGATTATTCAATGTATTCAAACCATTGGGGATGGTTCTTTGACTCCTTTAAAAAATCACTTAGGGGATGATTATAGTTATAATGAATTGAAGCTAGTTAGGGCTTGGTATAACAGACAAAATAGTTAAATAATTACTATGGAGTTAGGAGTTAGGAGTCAGGAGTCAGGAGTTAAATATTAGTTATAACTCACTGGTTAAGAGAAAGGCTATAATTAATCATTATAGGTTTCAAATTCTAATC # Right flank : ACCTTTAAAAACTGCGATTAACTCCAATCAACTGCGATCGCTGATAAAGTGATTAACATTGGTCACTGATCACTGTTTACTGTTCACTGCAAAAACGAAACAGTTAACCCTGACGGATAACGTTATCCGTCAGGGTTATCAACTGTTAAACTCAAGCTAAAATAGAAAAAGTTTTGCTGATCACATCGTCCATTTAGACAAAGACGTTATAAATTGAAAAAGAAAAGAAGGAAAAGAATCCGATTGGCACAAAATACTATCCTGAAATACAAAAAGAGGACTCCCGTTATATTTCTCCCCAAAAAAAGACTCATAGAAATTAACGGGAGATGAATTTTTGCCAACAAATAAACCGACCAGCGGGAGACAACTTACACGAGTTGACATTGTGTGTAGATTAATTTAAACTAGGGAAAGTATTAATAGTGGTCGAACTAATGCTTACATTAACTTACGAATTTAAGCTAATCCCAAATAAGCAACAAATTGAGGTAATTGAA # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-3, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCTATTAGGTTGAATAGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //