Array 1 210150-208654 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFM01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2188 NODE_2_length_538721_cov_4.95129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210149 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 210088 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 210027 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 209966 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 209905 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 209844 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 209783 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 209722 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 209661 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 209600 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 209539 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 209478 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 209417 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 209356 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 209295 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 209234 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 209173 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 209112 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 209050 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 208988 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 208927 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 208866 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 208805 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 208744 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 208683 29 100.0 0 ............................. | A [208656] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228628-226831 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFM01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2188 NODE_2_length_538721_cov_4.95129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 228627 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 228566 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 228505 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 228444 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 228383 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 228322 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 228261 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 228200 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 228139 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 228078 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 228017 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 227956 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 227895 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 227834 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 227773 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 227712 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 227651 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 227590 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 227529 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 227468 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227407 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227346 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 227285 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 227224 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 227163 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 227102 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 227041 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 226980 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 226919 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 226858 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //