Array 1 1426-2492 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRWU01000085.1 Escherichia coli strain KCJK8373 NODE_85_length_2655_cov_10.644778, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1426 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 1487 29 100.0 32 ............................. CGCCAGTGGGGGAGCCGTGAGGACCTGACCTG 1548 29 100.0 32 ............................. CTGACCGGATTTATTAACCCCGTCAACCGTAC 1609 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 1670 29 100.0 32 ............................. GGCGGCATTACTGCTGCGAGTATAACTACGAT 1731 29 100.0 32 ............................. CCGCCTGATGGCGACGCGTCTTTTAACCCCAT 1792 29 100.0 32 ............................. TTCGTGATTCAGGATCTGGCGATTTATCAAAA 1853 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 1914 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 1975 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 2036 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 2097 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 2159 29 100.0 32 ............................. CTCTGATTCATCGGCGGCGATACTGTCATCAC 2220 29 100.0 32 ............................. GAAAAACAAATAGATGGATAGCTCGATATCAT 2281 29 100.0 32 ............................. ATTATTAATTCTGGTGGCGCTGGTCGCCCTGG 2342 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 2403 29 100.0 32 ............................. CCGAGCATTATATCCTGTGCGTCGTTCATTTA 2464 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCAGAAAACATGAAAAAACTTTGGGAGGGGATGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATACTGTCCCACGAATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 130-1073 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRWU01000007.1 Escherichia coli strain KCJK8373 NODE_7_length_124344_cov_16.073694, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 130 29 100.0 32 ............................. CTCTTCAGCAATGAAATCGTCAAACGAGATTA 191 29 100.0 32 ............................. CACAATTATTCGGTACGACGGGTTCAGGCATT 252 29 100.0 32 ............................. GACCAGAGATGTCGTAGCCGTATTTCGCAGCC 313 29 100.0 32 ............................. TCACCGGGTCAGATACTGATGTTATGGCTTAT 374 29 100.0 32 ............................. AATGCAGGGCTGGGATCGGGAAAAACAATTTA 435 29 100.0 32 ............................. CTCATCAACCAGAATACGACCCGCCTTTTTGC 496 29 100.0 32 ............................. ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA 557 29 100.0 32 ............................. AGGAGTTTAATTTCCAGATTGAGCGCTGGATA 618 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 679 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 740 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 801 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 862 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 923 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 984 29 96.6 32 ...C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1045 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGATG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26623-27871 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRWU01000007.1 Escherichia coli strain KCJK8373 NODE_7_length_124344_cov_16.073694, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26623 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 26684 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 26745 29 100.0 32 ............................. AGATCAACACGGTAGATATTTCCGTGATTGGG 26806 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 26867 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 26928 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 26989 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 27050 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 27111 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 27172 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 27233 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 27294 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 27355 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 27416 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 27477 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 27538 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 27599 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 27660 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 27721 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 27782 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 27843 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //