Array 1 45748-42485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQVG010000003.1 Corynebacterium diphtheriae bv. mitis strain 16-13 NODE_3_length_194317_cov_52.977852, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45747 29 96.6 32 ............................T GGTGAAGTAGATCACCAAAATAAAAGCAAGCG 45686 29 96.6 32 ............................G TATGGAGGACACTCCAACCCCCGCACTGGGTT 45625 29 96.6 32 ............................G TTGTCGATTTTGAGGCCGACGATGGTGAGTGG 45564 29 100.0 32 ............................. CCTGCGCAACCTGCGCGGGGTTTTCCCTTAGT 45503 29 100.0 32 ............................. CCTGCGCAACCTGCGCGGGGTTTTCCCTTAGT 45442 29 96.6 32 ............................G TATCCCCCTTGGCGAGGAGCTGCCCTGCTGGG 45381 29 96.6 32 ............................G CACTCAGACCTCGTCAATTTCATCCAGCAAGG 45320 29 100.0 32 ............................. CCACCGCTACGTAGCGCAGGATGAAGATCCGC 45259 29 100.0 32 ............................. AGCTCGGTTTGGGGGTCTTTCCCAGCCTTAGC 45198 29 100.0 32 ............................. ATCGGCACTGCCTGGTTTGCCTGCACACTTTG 45137 29 96.6 32 ............................G TGGGATAAGTTCCGCGAATACGTAGACATATC 45076 29 96.6 32 ............................G TATCGCCCGCCTCATCGAATGGCACGACAAGG 45015 29 96.6 32 ............................G AAAAATGATTGACATTAAGAACATTGAGTGGG 44954 29 96.6 32 ............................G CGTCCACGCGTGCGGAATGGCTAGGGGAACTG 44893 29 100.0 32 ............................. GCAACCGCGCCTTGCAGAACTGATAGGGGTTT 44832 29 100.0 32 ............................. CACGCGAGCGGCGTTAGCGTCTTTGTCGTGAC 44771 29 96.6 32 ............................G AAGCTATTGCAGCAAGTTATAGACGAGGGCGT 44710 29 96.6 32 ............................G GATGTGGACAATTTAAATGAACGAGAAAATTC 44649 29 96.6 32 ............................G GGGTGATAGCTTTTGGCTGGTTCCGTCGGTGA 44588 29 96.6 32 ............................T AACATGGAACAACAAAGAGACTTTGATACAAC 44527 29 100.0 32 ............................. TCGCTAGGTATCCGCTGTGATGACTGCAAACT 44466 29 100.0 32 ............................. GATCAACGCGACGGCGCGACTACCACGGGTGG 44405 29 100.0 32 ............................. TCAAGTTCCGAAGATTCGTTGTGGTCGGCAAT 44344 29 100.0 32 ............................. GCTGGCCACAGTACCTGCGCTAGGTAGCTATG 44283 29 100.0 32 ............................. TTAATGAACGTCTCGCGCCGCGACGCTAAAGC 44222 29 100.0 32 ............................. ATGGCGCGTACCAAAACCCACCTGCCGAAACA 44161 29 100.0 32 ............................. TACTCGATGACAGTTCACTAGCCACGAGTGTT 44100 29 100.0 32 ............................. CGTCCTAGATCAAGCAAGGGAGCAGCTCGGAT 44039 29 96.6 32 ............................G GAGCCACCACAATGACCATCAACGCCGCAGCA 43978 29 100.0 32 ............................. CGCGATAAGCAGGGGCGCGACTGCACCAACGC 43917 29 100.0 33 ............................. AGTCCACATAGTCGACCCAGCCCCAGAATGCGG 43855 29 100.0 32 ............................. TGCGAAGGCGACTACGACCACGACGCAATCGC 43794 29 100.0 32 ............................. CAGCTTTGTGAGACGATTTCCGCTTACCCTTA 43733 29 100.0 32 ............................. GCCGCAATCGGGGACGGGTGCAGAGCAGTAGC 43672 29 96.6 32 ............................G CTCAGCACCCGAATGCACCAGTGTTTGACGCT 43611 29 100.0 32 ............................. GACAGTAGCGGTAGTGGGGAACGCCACTTATC 43550 29 100.0 32 ............................. CTCTCGATTTGATTATTACAGAGGCGGGTTCT 43489 29 96.6 32 ............................T TTGTGAGCTGAGGTAAATCGCTAGGAACCAGT 43428 29 100.0 32 ............................. GTCCCCGTGAAAAACTGGGAAACCCTAGAACC 43367 29 96.6 32 ............................G TCCTGTGATTGTTGATGCCTGTTCGGCAAGCA 43306 29 96.6 32 ............................T ACCGGCGCGCACGACTCCAAGCGTCAAGAACG 43245 29 100.0 32 ............................. TGGAGCAAAAAGGTCCCTTGTCGCTAGAGGAC 43184 29 100.0 32 ............................. AGACCACTGACAGCCGGCAGATCAACCCCTGC 43123 29 100.0 32 ............................. TGCGAAGGCGACTACGACCACGACGCAATCGC 43062 29 96.6 32 ............................G CTCAGCACCCGAATGCACCAGTGTTTGACGCT 43001 29 100.0 32 ............................. GACAGTAGCGGTAGTGGGGAACGCCACTTATC 42940 29 100.0 32 ............................. CTCTCGATTTGATTATTACAGAGGCGGGTTCT 42879 29 96.6 32 ............................T TTGTGAGCTGAGGTAAATCGCTAGGAACCAGT 42818 29 100.0 32 ............................. GTCCCCGTGAAAAACTGGGAAACCCTAGAACC 42757 29 96.6 32 ............................G TCCTGTGATTGTTGATGCCTGTTCGGCAAGCA 42696 29 96.6 32 ............................T ACCGGCGCGCACGACTCCAAGCGTCAAGAACG 42635 29 100.0 32 ............................. TGGAGCAAAAAGGTCCCTTGTCGCTAGAGGAC 42574 29 100.0 32 ............................. AGACCACTGACAGCCGGCAGATCAACCCCTGC 42513 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 54 29 98.6 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAGCCCGAATGACACGCAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCGTAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : AGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGATCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //