Array 1 152709-153008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJMH010000006.1 Collinsella tanakaei strain An833 An833_NODE_6_length_175577_cov_73.1816, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 152709 33 100.0 33 ................................. GCCCGACTCGCATACCCGTTTTGCATGTTCCGG 152775 32 78.8 33 A.T........-..A......C........G.A CCGCGTCCGTGGTGCTCACAGACTCACCGGTAA 152840 33 93.9 34 .C...................C........... ACGTGCTCTCTCCCGGCGCGGAGTGGGCGCGCTG 152907 33 93.9 36 ...A............A................ GCCGATCGTAGCCCGCGTCTGAGAATGCGCGGTCGA 152976 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 93.3 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Left flank : TCCTCTCGCCGAGAGGACCGGTTTTTGCCAAGAGGATCTCGATCTGCTCTGGACGGCATTCATGAACATGTTCGAGGTCGACAGGAGCGCATCGCGTGGCCTCATGACTTCAAGGAAGCTCATCGTGTTCAAGCATGCGAGCAAGCTTGGAAATGCACCCGCGGAAAAGCTATTCGAACTCGTTCACGTCAATCGTGTGATTCCTCAGGAGCAAGCTGCCCGCTCGTATGCGGACTATGAGATAAGTATCGACACCGAGGGGCTGCCCGACGGGGTGGAGGTTAAGGAGTTCGACTACATCGCCCCGATGGTCTAAGTGCTTTCTGTTCAGCATGGGGGTTAACCGTGTATTCCGAAGACGAGCTTCTCCCGTTATCCGGCCCTCAGCATCTGTCGTTTTGCGAGCGGCAATGGGCGCTCATCCATGTCGCATAACCTGTGTATTGCGCCAATGGCTGAGGCTAGTAATCGATGCGGAGGGTGTTCTGGAGCTGAGCGCG # Right flank : TCGGTTTTCTCAAAGCTCCTCCGTATCGAGTTGGGAGACAGGTTTTTTCGGCAGGTCGAGGAGGCCGCCAAAGGACCCTGTTAACGCGGCGTTATCGCCGTTCCATTCGATGCCCTCACGCGAGCCCGCAACGGCGTGCGAACCGGTCGGCCCCGATCCGCAGCTCGGCTGCCTGCATGCCCGCAGGCCGGGCAGGGCGAGCCTCGCCCTCGATTTGATCGAAGAGCTGCGGGCCCGCACGTCGATCGGTTCGTTGCCGCCCTCTTTAACGGGCGTCAGGTAAAGGAGACCGATTTTTCTTTCGACGCCGAGGGAGGGTGCTTCTTCAACGAGAGGCCTCCCAAAAAGGGTTCTTGGCCTTTGACGGCGGCGCAAACAGGAGGAGATTCTTCATCCATTTCTCAAAGAGCGTGTGCCGATGGGGCTCATCCCCTTTGTCCAGGCACAACTATTGGCTCGATATTTACGCGGGGACCTAGACGATTACCCGGCATGTCTAT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 153986-155022 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJMH010000006.1 Collinsella tanakaei strain An833 An833_NODE_6_length_175577_cov_73.1816, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 153986 33 97.0 32 ................................T GCGCCATGCGGTAGAACTTTCCGTCGTACCTG 154051 33 97.0 33 ................................C CGACCATGAGTGCATCAACGCCTATATCCTGAC 154117 33 97.0 36 ................................T CGTTGAGCGTGTTGGCGGTCTGCTGGTCGAAGCCGC 154186 33 97.0 34 ................................C GTACTATGACGAGACTACCGACCACGTTACCGTG 154253 33 100.0 34 ................................. GTGCCATCGACGGTCTTACGCACATTGGTTAGTG 154320 33 97.0 34 ................................G CGCCGAACGTCACGGTCAAGGGCAACGCCAGCAA 154387 33 100.0 33 ................................. TCGATGGCCTGTACTCTCAGGCTCACGGGCGCC 154453 33 97.0 33 ................................T TGATGAAGTCCGCGTTACCCCTTAGCGGCTCGT 154519 33 100.0 32 ................................. CGTACACGATACGGTCTATGAAGGCATACCAC 154584 33 100.0 34 ................................. ACTTTCACGGTGCGTGACACGTCGAATGGCCTTA 154651 33 97.0 35 ................................T CCCTGTCCGCGACCACCGTCACCGACGCGGCGGCC 154719 33 93.9 35 ..............A.................G AGGCGCGGTAGTACAAGCCCTTCCATCGGAGCGGC 154787 33 97.0 35 ................................G TCAACCCCGCCAAGGCTCACGTGTACTCCCCGCAG 154855 33 97.0 35 .............T................... CGATCGACATCGAGAACGTCCTCGCCACGGTCACC 154923 33 93.9 35 ..................T.............G GCACCATCGGTACGGTTTACCCGCCCGATCCCGTG 154991 32 72.7 0 ......TT.A.T....A....C.....-...TG | ========== ====== ====== ====== ================================= ==================================== ================== 16 33 95.8 34 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACA # Left flank : GACGATTACCCGGCATGTCTATGGAGGTGAGGGGCAGTTGTATGTGCTTATAACGTATGACGTTGCCACAGGAGAAGACGGCGGAGAGCGAAGGTTGCGTCGTGTCGCAAAGACCTGCGTGAAATATGGGCAGAGGGTCCAATGTTCTGTGTTTGAATGCTTGCTGGATCCTGCGCAATATGAATTGCTGAAGCATGAGCTTGCCGAGATAATTGATAAAGAGAAGGACAGCCTTCTCTTCTACAATCTTGGTAAGAACTGGAAACGTCGCGTCGAACGACTTGGTGCGAATGATGCATATGATCCAGAGGGCTTGCTGTTGATATAGGCGCTTGTTGTCGCTGCGCGAGCCTTAAGCTCCGTCAATACTTCGGGAGGTTCGCGCAGGTAATGAAAGTATGTTGTCATATTTGTAACGGCAATATGTCCCATGAAGGTATGTTAGCGCCGACGACTGCATATTATCGGCAGATTTATTCCCGTTGACGTATACTAAGGCC # Right flank : GGAGCTTTCACGGCTTCGGGGAATGATGAAGGGAACACCGCTGCTAGAACCGCTGCCGCGGATTGCTGCACGTTGAGCGTTTGCTCGATCAGGGGCCCGACAATGCCGTGTTTCCCGATTCTCTGCTGCTTGTTTTGCGATTGCTCGTTGACACCCTGTAACGTCTGATGACGCAAGCATCTTGAGGCAGTCTAAAAAAGATGGATCTGAAGATCTCTTTATCATCGCTCCGCGACATTTCGGCAGGGGGGTCGTGGATCGATGCGACGATCGCGCATGGTCGATGTGTATCACGGTGTCTTGCGTCTCTTCCCGTGGCGTGTACTCTCGCAGACGGGTAGACTTGACCCAGCACGCAAACGAGAGGATGACTTATGCCCGATACCCGCCGCACGTTTGCCGTCATCGATGGCAACTCGCTCATGCACCGCGCGTTCCACGCCGTGCCGCCTACCATGAACGCGCCGGACGGCCGTCCCACGAACGCCATCTTCGGCTTC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //