Array 1 94568-95814 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOGH01000019.1 Salmonella enterica subsp. enterica serovar Newport str. Henan_3 contig019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94568 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 94629 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 94690 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 94751 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 94812 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 94873 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 94934 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 94995 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 95056 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 95117 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 95178 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 95239 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 95300 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 95361 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 95422 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 95483 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 95544 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 95605 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 95666 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 95727 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 95787 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 103759-105477 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOGH01000019.1 Salmonella enterica subsp. enterica serovar Newport str. Henan_3 contig019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103759 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 103820 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 103881 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 103942 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 104003 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 104064 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 104125 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 104186 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 104247 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 104308 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 104369 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 104430 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 104491 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 104552 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 104613 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 104674 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 104735 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 104796 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 104857 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 104918 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 104979 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 105040 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 105101 29 100.0 32 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCAT 105162 27 69.0 15 ................TTCT--.C.G.T. GCAACGACAGAATGC Deletion [105204] 105204 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 105265 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 105326 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 105387 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 105448 29 100.0 0 ............................. | A [105475] ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCAAATGGTCGTTTTTTTAAATTTTGGTTTGTCATGAATGGTGTTGATGCTGAGAGATAAAGTATGATGAAATGAAGTAGTTAAATTTAATTAATTAATGGTATTCATGGAAATGGATGTAGATAGAGAAGCTGCAAAGATTTTAGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCCGTTATCCAACCAATCCAAAACGTTTACTATAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATTAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAGAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //