Array 1 1-234 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJZH01000014.1 Campylobacter coli strain BCW_6914 207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... AAGCTTTAGACTTGCTAAAAGCTTGGAATA 67 36 100.0 30 .................................... CTTTTTTAATTATTTGAAAACGACATTATT 133 36 100.0 30 .................................... GGTGTTAGGGTATAAATGAAAGTTTGAGTT 199 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTAGCCTATTGTTAATTGTTTGTATGGTAAAAT # Left flank : | # Right flank : TAGACTTATCTCAAAAGCCTATTTTATCAATGTTTTTTCTTGTTTTTTAAGCAAAAACTTACGCATACCCTTTTTTCATTTTTTGTTTCTTTAACCTCTCAAAAAAAATTTGTGCCTCATTAAAACTTGAAAATACATTATTTTTTCTTCCTGTGCAACTTTTAAAACGCACATTTCCGTAAACTCTCTCAACCATATATTCCTCAAATAGAGTGGCAATAATTTCTATGCTATAATAGCGAATGTTTCCTTTCTCAGTTATTCTGTGCAACAAAACATTATTCATAAAAAAACCTAATTAAAAATTATTTATTTTATTCAAAAAATCATTTTTAAACATTTTTTCTATAGCAAGCTTAATCATTTGATTAATTTTCTCATTTTCTTTATTTGTATTAGAAATTTCATCTTTGTAAGTAGGAATCATCATTTCTATCATTTTTAATGTTTTTTCATCAAATAATACTCTTTTTGGAATTAATATTTCATTTTTTTGAATA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCTATTGTTAATTGTTTGTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 10611-10975 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJZH01000010.1 Campylobacter coli strain BCW_6914 203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 10611 36 100.0 30 .................................... AACAAAATCAATATGAACCCTTGAAGCTCT 10677 36 100.0 29 .................................... GATTGTTGATTCTCTAAATTGCGTTACCA 10742 36 100.0 30 .................................... CCTAACCCTTAAATAGAAAAGTCTTCTTCT 10808 36 100.0 30 .................................... TTTTTCAACAAGTGGAGCATTAATCTAATG 10874 36 100.0 30 .................................... ATCCAAATGAAATGCAAATTTTTCATTAAA 10940 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 ATTTTACCATGTAAACAATTAATAATAGGCTAAAAC # Left flank : GTAAGAACTGATTTATTTGCAGATAAAGAAAATAAATTCCATGCAGTGTCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGTATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGTATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGTGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGCTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTGAGATAAGTCT # Right flank : ATAGCTTTTAAATATTTAAATTCATAAGAAAATATTTCTTAATCTACTTTCATCGCAACTTTTCAAAAAATCATAGATTTTCTTTCTATAAGTTGATTTATCCTTTTTCCAAGTATTTAGCGTTGGCAATGGAATTGTTGTAATTTTGGCAATTTTAGAATCACTTAAACCTGTATTAGAAGAATTAATAGAATTTGAAAATATTTCTTTTAATTCTTCTTGATTAGTGTTTTTTAAAAAAAGATATATTTTTCCCCTCCAATTGTCTTTTTTTTGTTTCCAGTCTCTAATAGTGAAATAAGGAATATTAGTAATTTGTGAAATTTGGACATCATTGTTCATCAGGCTTGAAACCACTATCTAAAATTATTTTTGTCATTACACCCTTAAGTTTATCAAAATGATTTAAAGCTTGCACATTGCTAACTCTAAGTAATCTTATTTTCCCATCTTTTTTATAAAACACCTGAAAAACTTCATCGCTTTGTTTGCATTTCACC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATGTAAACAATTAATAATAGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //