Array 1 18942-20752 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYSN01000021.1 Cutibacterium avidum strain UCD-PD2 scaffold_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 18942 36 100.0 41 .................................... TTGAAGGAGATGCTCAGCGCCGAGAGCATTCCCAGCCCCAG 19019 36 100.0 39 .................................... ATGTGGCAATCATGTCCGCTAGGCCGGACGACCTAGCAG 19094 36 100.0 37 .................................... TGGCGCAACACTGTCCGTCCACAGGATCATCACCGGA 19167 36 100.0 37 .................................... ACCTCACGGGCGATATCCACAACATCCGCGTCACTGG 19240 36 100.0 38 .................................... ATCAACCTCGTATTGAGCCCACTGAAACCCGTCAATAA 19314 36 100.0 34 .................................... CCCCAAGGCCTTCGGCAACCGCGACGGGTCCGCC 19384 36 100.0 36 .................................... TCGGTTAACGTCATCAGTGTTTGGTCTGCCCACTGT 19456 36 100.0 41 .................................... ACCCGTTCGGTCGCGCCGGGGCCACCGACGCACTGGTGGCG 19533 36 100.0 38 .................................... CTCACCGCTGCTGAGCGGCACACGGCTGCTCGCACCCA 19607 36 100.0 39 .................................... ACGCGGGAGCAGTGGCTTTCTCCGCAGGTGTGGCCCGCT 19682 36 100.0 37 .................................... CCGGAAACGAACCCACATTCGGGGTGTCACCGTCATC 19755 36 100.0 40 .................................... AGTCCCCGTCCAGCACCCGATGGTGGCCCTCCAGCCGTCA 19831 36 100.0 36 .................................... ACAACCCCCGCGACACCCCCCGGTTCACCGACTGAC 19903 36 100.0 38 .................................... CGACTCGTCAAGATCGCACACGCGGCCCCATGCACCCA 19977 36 100.0 39 .................................... CGGTGGCCTTGTCCATCAATTCACCCGAGATGGTGTACT 20052 36 100.0 37 .................................... TAGTGAGGGGCAGCCGGAGCCTGTGGCGAGGCCTACT 20125 36 100.0 39 .................................... AAAACAGATAAGGCCGACTGGGAATGGTGCCACGATGAG 20200 36 100.0 39 .................................... AGACACATGGAGGCACTCAGGGTCACTCGATGCCACTGT 20275 36 100.0 41 .................................... CTGATTCGAGCCCGGCGCGTCACCGTGCCCATCGTGCTGCG 20352 36 100.0 37 .................................... CGGCCCCTTGTCACTGCAAAGTCAGGAAAAGGAGACC 20425 36 100.0 37 .................................... CGGCCCCTTGTCACTGCAAAGTCAGGAAAAGGAGACC 20498 36 100.0 37 .................................... AACCCCGAGGGCATTGAGACCATCGAGAACTCCAAGG 20571 36 100.0 37 .................................... GTCGGCTAAGCAGCAGGCACACTATGACTCTGGGTCG 20644 36 100.0 38 .................................... ATAGCCAATTGCCATGAGCTAAAGACTCATCACCCCAC 20718 35 80.6 0 ...C....C.G..C....G.............-.C. | ========== ====== ====== ====== ==================================== ========================================= ================== 25 36 99.2 38 GCCTCGGCTTAACTGCCGAGGCAACTTCGTTGAGGC # Left flank : CCGCGGGGTGACGGTCAGATGAGTCGTCAACCCGACGAAATGGCGTATGTCATCGCATATGACGTAGCGGACGATCGCCGCCGCGACGCAGTCGCAAAGGTGCTGGGAGGCTATGGGAACCGTGTGCAGTACAGCGTGTTCATTGTGGTGTGCACCAAGGCGGCACTTCTTCGGTTGCGTCGGAAGCTGACTGGGGCCATAGATCGTGAGGAGGACGCGATACTTGTGGCGCTCCTGGGCAGCGATGGCCCATCGGGTCTTCCAGTGGATTGGATAGGTCGAACACGAAAAGTGTTCGACGATGCGCCCGTCATCGTTTGACGCGAGAGGGTCACGGATCATGAAACCGTGCTGACCGCTCGCACACACGAAGCTAGTTCTCAGAGACGGTTTCAGCGAGATACCGCGGTGTGATTCTTGATAACTACATATTCCCGAAGCGGGACCTCTCGCGAAGGGTCGATATTCTTCCTCGTGAGAGGCGCCTAGATTGCCACGCA # Right flank : GAGGTCCTACTCCCTGTCTTTCCCCGTGAAGATGGGGAAACCTCCACATTCCCGACCCACCCAAC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGGCTTAACTGCCGAGGCAACTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 39915-40557 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYSN01000005.1 Cutibacterium avidum strain UCD-PD2 scaffold_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39915 29 100.0 33 ............................. TAGCCAGTAGCGCCACCGATGAGATTGAAGCCG 39977 29 100.0 32 ............................. CCTGACGTCATCATCGAGCTAGCTCAGACTGT 40038 29 100.0 33 ............................. AAATATTTCTGGCGCGGCTGCTTCGAGCGCGCG 40100 29 100.0 32 ............................. TTCCACGTTGATCAAGGTCAGACGGTCGGTGG 40161 29 100.0 32 ............................. GACCGGGCCAGCCGTGACTTGTCGAAACGCTC 40222 29 100.0 32 ............................. CGGTGGAATGGCTGGCCGAGCTGATCCCCTCA 40283 29 100.0 32 ............................. CGGTGGAATGGCTGGCCGAGCTGATCCCCTCA 40344 29 96.6 33 ............................A CCGTGCAGGTCGCCAACCGCGAGGACCGGATCG 40406 29 100.0 32 ............................. AGTTGGGATGCGGCAACACTCGTCACATCGGC 40467 29 100.0 33 ............................. ATTTCGCCGTCGTCGGTGGTGAGCTTGCCGGGG 40529 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GTCTTCCCCGCCTACGCGGGGGTGAGCCC # Left flank : GACGCTCCGGGAGATCCCGATGACGGATACGGGTGGGACGTCGTCGACCTGTGGGACGACCGCGTGGGTACGGTCGCCTCAGGGAGATCGTGGGCATAGCCGTGGTCGTGCTCGTCCTCACTGCCTGCCCTGCAGGGCTGCGCGGTCATCTCACGCGGTGGCTGCTCGAGATCAGTCCCGGCGTGTTCGTCGGGCATGTTCCTGCACGGATCAGGGATGCCCTCTGGAGCCGAGTCGTTGAAATGTGCCACGACGGGCGGGCGATCCTCGTGTATTCGGTGCGCGGCGAGCAGCACTTCGAGTTCCGCGTGCATCGACATGACTGGGACGTCGTCGACTTCGACGGGCTGAAACTCATGCAGAGGCCAAACAATAGGGCACACACCTCGACACTGCGGCCAGGATGGAGCTCAGCCGCGCGGCGACGTAGGACGGCCAAGCGCTAGATCGAGTACACTTGTATCTAGGCAAAGCTCCTGCATCAGCCGTAGTCGGCTGGT # Right flank : CGGTTGGAGCAAAATTATAAAAGAAGGACAGGAAATAGTGCTCCTCTGGTAGTATCAAAAGCGGCTATGTGGCTCAAGAGGGTTATTGAGGATGGCAAATTTCCAGAGCCTGAGTATCCGTGTCTTAGCCACAGTGACGTTCACCCGGCCAATCTAGGAATACGTCAGACTACAGGGAAGACGTGGTGTTTTGATTTTGATCAAGCCGGCTGGCGAGATCCAATATTTGATCTGGCAAAGATCTATCTCTATGATTGGCGCACTGACCTTTTTAAACACCGCCAACTTGCGTTTGCGTTATCGCAAGAGCTGAATTTAACCGAACAACAGTTCGAGAGGCGACTTCGCTGCTCGATGGCAATCGAATGCGTTTGGGGACTGGCGTACTATTTGCAATACAAGAGGGAAAATGTTGCTGATCGACTGGAGTTTGTAGAGAAAGTAGTATGGATATGAAGGCGAAAGAAATTCGAGTTCGGGCAGCTGGAATAATGCGGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //