Array 1 87184-87564 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYN01000041.1 Propionibacterium freudenreichii strain CIRM-BIA 118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================== ================== 87184 27 100.0 46 ........................... CATTGAGGCGTGCTGAAGGGCACATGGCAGCAGATCGCTTCGACGG 87257 27 100.0 42 ........................... NNNNNNNNNNCCAGCGCAAGCACGGCAAGCTCACTGTCGCAC 87326 27 100.0 45 ........................... CATTGAGGCCGATGGCCGTGCAGTCCGAGCTCAATGTCACCTGGC 87398 27 100.0 43 ........................... NNNNNNNNNNGTGACTTTCGATACCACCACGGATCGAATCACT 87468 27 100.0 43 ........................... CATTGAGGCCCGGTGCAGGGTCGCCGTCACCCCCTCGGGTCAG 87538 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================================== ================== 6 27 100.0 44 ATTGCCCCTCCTTCTGGAGGGGCCCTT # Left flank : ATATAGGAATGACGGTCAGATGAGCCGACGAGATTCCCATTGCTTTCTGATCGCCTACGACGTGCCCGATGACCGTCGTCGCACCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCAGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCC # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGCGGAACACATCTTCCGTCCTGGTGAAGAACATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGGTAATCCTGCGCGATGGCCGAAGGGCGTTGTGCTCAAATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTCGGCCTGCGGTGTCGTATCGCACCACATCCTCCCGATTGCCCCTCCTTCTGGAGGGGCCCTNNNNNNNNNNTCCGGGTCTGCCAGTGGGGTCACCATGCCCCATTCGAAAGATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNGAACAAGTATCTTCAAGAAAAGTCGGCTGAACATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTGCGGTCCGCCGCCTTGTTGGTCAGACCCTCGCGGGCATTGCCCCTCCTTCTGGAGGGGCCCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 87673-88891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYN01000041.1 Propionibacterium freudenreichii strain CIRM-BIA 118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================================================ ================== 87673 27 100.0 47 ........................... CATTGAGGCGGTAATCCTGCGCGATGGCCGAAGGGCGTTGTGCTCAA 87747 27 100.0 45 ........................... CATTGAGGCTCGGCCTGCGGTGTCGTATCGCACCACATCCTCCCG 87819 27 96.3 49 ..........................N NNNNNNNNNTCCGGGTCTGCCAGTGGGGTCACCATGCCCCATTCGAAAG 87895 27 100.0 42 ........................... NNNNNNNNNNGAACAAGTATCTTCAAGAAAAGTCGGCTGAAC 87964 27 100.0 46 ........................... CATTGAGGCTGCGGTCCGCCGCCTTGTTGGTCAGACCCTCGCGGGC 88037 27 100.0 46 ........................... CATTGAGGCACGCCCGGACGTGACATCCATCAGTTCTTCGACCCCG 88110 27 96.3 80 ..........................N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGGGGCCGCAGATCACGCCGATTATTGGTGTG 88217 27 100.0 43 ........................... CNNNNNNNNNNATCACGGGACCGCGGTCGCCTATCCTCGGATT 88287 27 100.0 45 ........................... CATTGAGGCTCCCGAATCTTTTTGTAATTGTTTGGAAATATTCTG 88359 27 100.0 55 ........................... NNNNNNNNNNNNNNNNNNNNNNATGATCTGCGAGCGGTGCGCCTTCACCGAGCAG 88441 27 100.0 45 ........................... CATTGAGGCGTGGGCGACGGGGTCGCGAAGAACCGTGGCTTCAAC 88513 27 100.0 46 ........................... CATTGAGGCCGGATCCGGTCACGGTGGCGTGCGGTCATGAGGTCGG 88586 27 100.0 45 ........................... NNNNNNNNNNTCAAACGCCCGCAGTGGGGAGGCCGTGGTGTTGAA 88658 27 100.0 43 ........................... CATTGAGGCGGGGCTGACGTTCTCCGTTGACGGCCAGCACAAA 88728 27 100.0 44 ........................... CATTGAGGCAGCGAGACTCTCGGGCCGCTTTTGAGCTTCATCTC 88799 27 88.9 39 ........................NNN NNNNNNNTTTGAACCGGTCAGACGGGTCATCACCTTGAC 88865 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================================================================ ================== 17 27 98.9 48 ATTGCCCCTCCTTCTGGAGGGGCCCTT # Left flank : CCACGCCCGCCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGTGCTGAAGGGCACATGGCAGCAGATCGCTTCGACGGATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNCCAGCGCAAGCACGGCAAGCTCACTGTCGCACATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGATGGCCGTGCAGTCCGAGCTCAATGTCACCTGGCATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNGTGACTTTCGATACCACCACGGATCGAATCACTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCCGGTGCAGGGTCGCCGTCACCCCCTCGGGTCAGATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGCGGAACACATCTTCCGTCCTGGTGAAGAAC # Right flank : TCATTGAGGCGCCGCCTACCAGATCGGTGCCGACCAAGCCCAGGTCATTGCCCCTCCTTCTGGAGGGGCCCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTCAAGTCGCTGACCACCACGCTGGCCCACATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNTGACCCAGGCTTCCATGTCGGGGGGCGTCACGCGATTGCCCCTCCTTCTGGAGGGGCCCTTCNNNNNNNNNNGTTTGCCACCAACCCCACAAAGATAAGTAAATTGCCCCTCCTTCTGGAGGGGCCCTTCAT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 90714-89361 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYN01000041.1 Propionibacterium freudenreichii strain CIRM-BIA 118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================================================================ ================== 90713 34 100.0 37 .................................. GCCCAGACGGGTCTAGCGAAGACCACCGTCCTCAAGC 90642 34 100.0 39 .................................. GAGATGCCGAGGTCGCGGAGTCGGGCATGTCCGTCGNNN 90569 34 79.4 37 NNNNNNN........................... CAGCGCTTCAGATCAGCCTCGACCGCGGCGGGCGTGC 90498 34 100.0 40 .................................. CGGTGGCGGCAACTGGTCAACCGTCAATGGCGTGAANNNN 90424 34 82.4 80 NNNNNN............................ AGGGCGATCTGCTCGTCCCATGGTTCGTGCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 90310 34 82.4 40 NNNNNN............................ ATGGTCACTTCACCCTCTCTGATCTTCCGGAATGATGAGC 90236 34 100.0 25 .................................. ATCAGCGACGCGCAGCAGATCTTTG Deletion [90178] 90177 34 55.9 37 GCGGTNNNNNNNNNN................... CCTGTGCAGTCGGTTTCCACCGTCGAGGCCGACAAGC 90106 34 100.0 34 .................................. GGGAGGTGCACTACGGCATCCCCGACTCGAACNN 90038 34 76.5 40 NNNNNNNN.......................... GCGACGCTGGCGAACACCAGGGAATTCCGCAAGATGCTGC 89964 34 100.0 39 .................................. CGGTGGGGCCTCTTGCTTTGTCCTTGTGATACCCACTGC 89891 34 100.0 39 .................................. TGCTCCCTGCTGGGGAGGCGTTGGGGGCACAGGTGGAGC 89818 34 100.0 36 .................................. TTCATCGTGGACTTCTGACCGCCGCCATAAAGTNNN 89748 34 79.4 38 NNNNNNN........................... CTTGCGCCATGTCTGCTCCTGGCGGCGGAGATGCCCGC 89676 34 100.0 37 .................................. GTGTGGAAGTCGAAGCCGTCTGGTCGAACAGCCTNNN 89605 34 79.4 39 NNNNNNN........................... GGTCGCTGTGGCCGGGCCGTGTGGTCCCGGCCGCCCGGC 89532 34 100.0 34 .................................. CCTGTGCAGTCCGTCGGCACCGTCGACGCCGAAN 89464 34 73.5 36 NNNNNNNNN......................... GTGCGTGTGACCGGGGACTCGATGACTGGCGTCGGC 89394 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================================================================ ================== 19 34 89.9 39 CTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Left flank : ATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGGCTTTAGCCATATCGTCCCGAAGAGATTTAATAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGGTGTCGGCTGGTGGCGCGGCTCGTGTAGCCGNNNNNNNNNNGAAGGGCCCCTCCAGAAGGAGGGGCAATCCCTGATCGGACACCGCTTGGTAGTTCGCTTCGCCTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTGGCTTTAGCCATATCGTCCCGAAGAGATTTAATAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTTTGATCAAAATTGTTTATAAAAATATTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCCCCTCCAGAAGGAGGGGCAATAGTGGGGTGGTGATGGCGATGCCGAAACGAAAGCCGGC # Right flank : TTACTTATCTTTGTGGGGTTGGTGGCAAACNNNNNNNNNNGAAGGGCCCCTCCAGAAGGAGGGGCAATCGCGTGACGCCCCCCGACATGGAAGCCTGGGTCANNNNNNNNNNAAGGGCCCCTCCAGAAGGAGGGGCAATGTGGGCCAGCGTGGTGGTCAGCGACTTGACCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGGGCCCCTCCAGAAGGAGGGGCAATGACCTGGGCTTGGTCGGCACCGATCTGGTAGGCGGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGTCA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 90900-91653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CCYN01000041.1 Propionibacterium freudenreichii strain CIRM-BIA 118, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 90900 36 100.0 35 .................................... TATTAAATCTCTTCGGGACGATATGGCTAAAGCCA 90971 36 100.0 36 .................................... AGGCGAAGCGAACTACCAAGCGGTGTCCGATCAGGG 91043 36 77.8 34 ............................NNNNNNNN NNCGGCTACACGAGCCGCGCCACCAGCCGACACC 91113 36 100.0 35 .................................... TATTAAATCTCTTCGGGACGATATGGCTAAAGCCA 91184 36 100.0 37 .................................... TGGCCTCGCGCCTGAAGTGACTCCGCGATGGCAGACA 91257 36 100.0 35 .................................... TCTTATGAATTATCAGCCCGTCACCGACGATGATG 91328 36 77.8 34 ............................NNNNNNNN NNTCAATGACCTGCACGCCGAGGTTGGTCAGGAC 91398 36 100.0 36 .................................... CAGATTCTCAGGCCGAATTACAGCACTGTGATTCGA 91470 36 100.0 39 .................................... ACGTGACCGGCCCACGTGACGATGACGATCCCCGACGAC 91545 36 100.0 37 .................................... TTCCCAGCGCGGGAAGCGCTGGCGGACTTGCACTCGC 91618 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 96.0 36 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : CCTTCTGGAGGGGCCCTTCNNNNNNNNNNTTCACGCCATTGACGGTTGACCAGTTGCCGCCACCGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCACGCCCGCCGCGGTCGAGGCTGATCTGAAGCGCTGATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNCGACGGACATGCCCGACTCCGCGACCTCGGCATCTCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTTGAGGACGGTGGTCTTCGCTAGACCCGTCTGGGCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGGCTTTCGTTTCGGCATCGCCATCACCACCCCACTATTGCCCCTCCTTCTGGAGGGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGAATATTTTTATAAACAATTTTGATCAAAA # Right flank : CGTCATGGACCGATCCTGTGATGTGTCCACACCCCACACCATTGCCCCTCCTTCTGGAGGGGCCCNNNNNNNNNNNNNNNNNNNNNNNNNCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGTATTGCCTCTCCTTCTGGAGGGGCCCTTCATTGAGGCGTCATGGTGTGCGCACAGAAACCTAGAGTACGGGCGGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGAGCGAAAGAGCGATCATTCCGGGTATGGATCAAACCATTGCCCCTCCTTCTGGAGAGGCCCTTCATTGAGGCTTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCATGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCNNNNNNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [8-8] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //