Array 1 422769-424321 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTHG01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H107 isolate H107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 422769 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 422830 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 422891 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 422952 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 423013 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 423074 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 423135 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 423196 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 423257 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 423318 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 423379 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423440 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423501 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423562 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423623 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423684 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423745 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423806 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423867 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423928 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423989 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 424050 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 424111 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424172 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424233 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424294 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440454-441093 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTHG01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H107 isolate H107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440454 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440515 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 440576 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 440637 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 440698 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 440759 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 440820 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 440881 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 440942 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441003 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441064 29 96.6 0 A............................ | A [441090] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //