Array 1 46844-44960 **** Predicted by CRISPRDetect 2.4 *** >NZ_FESF01000006.1 Neisseria meningitidis strain 2842STDY5881056, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46843 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 46777 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 46711 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 46645 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 46579 36 100.0 30 .................................... CTTTTCAATGTTAACTATTTTGCAAAGAAT 46513 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 46447 36 100.0 30 .................................... ATAAGATGGGAAAATTACCATGAGGCCTGC 46381 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 46315 36 100.0 30 .................................... ACGGCATTGTTTATAGATTCCTCACATATT 46249 36 100.0 30 .................................... CTGCGAACATGGCGACTCCTGTTTATTTAA 46183 36 100.0 30 .................................... ATGAGATTTGCCGTCTGCTGTTTGACGACT 46117 36 100.0 30 .................................... ATGTACATGATTTGGCAGGATGGGCATTGG 46051 36 100.0 30 .................................... TTTCTCTGCCTGTATCAGGTTGCACAGGCG 45985 36 100.0 30 .................................... CGGCATCTACGACGAGGACGAGGCACAGCG 45919 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 45853 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 45787 36 100.0 30 .................................... TTTGCTTCCTTTTAAAACTGTTTTGACAGG 45721 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 45655 36 100.0 30 .................................... TTACTTTCTTGGTTGGTCTTCTTGATGTTT 45589 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 45523 36 100.0 30 .................................... CACGGCAGGCAGAGCGTTCACGCTCAATTT 45457 36 100.0 30 .................................... TACAACCCAATCGGACAATACCCGAAGCAG 45391 36 100.0 30 .................................... AAAACTTTTTAGGGGGTCGGAAAAAAATAC 45325 36 100.0 30 .................................... AAGATGCGAAAATTAGCGCGGGACAGTGGT 45259 36 100.0 30 .................................... TTTTTTATTTTAATTTTTTATCCCCCAATG 45193 36 100.0 30 .................................... AGTTTTTAAATTTTTGATTTTGATTTTTTT 45127 36 100.0 30 .................................... GATTGAGATTTTCAACGAGCAATGCTTTGA 45061 36 100.0 30 .................................... TGCCAGCCCGGGCGATTTCGAGGCGGTCAA 44995 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //