Array 1 1551-2411 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFE01000065.1 Cylindrospermopsis raciborskii CS-506_C scaffold500, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1551 36 100.0 37 .................................... TTTTTAGCTGACTCTACGTCGTCAGCGTAGGGTATTC 1624 36 100.0 36 .................................... ACTAACCGAAACAGTGTTAGTGGCAAGAGAAATTAA 1696 36 100.0 41 .................................... TCTCTATCTGCCTCATGCCCAGGGCATGGAGGTCTTTTACA 1773 36 100.0 46 .................................... TCTATGCGTTCTTCAACCTGGTCTATGTATTCTTCTACTAGAGAAG 1855 36 100.0 38 .................................... TCGTTATAAGGGTCAAACTTACAGTGTCTTTCTAAAGA 1929 36 100.0 44 .................................... GCTAGAAAGCAAAGGTTGGGGTATTCTGCCTTTTAAATCTCTGA 2009 36 100.0 35 .................................... TTTCTAAAAACCCAAGTCTAATGCCTTTAGTACAA 2080 36 100.0 37 .................................... CACCCTGTTTCGATGGCATCGTTGTGTATAACTTCAA 2153 36 100.0 38 .................................... TTTTTGACGACCCGAAACTCGGAAGGTATCGCGACTGA 2227 36 100.0 35 .................................... CCAAAGGTACAGACTTAGCCACAGCCTCAGCTTCA 2298 36 100.0 42 .................................... TTACTTTTCTGAGGAAACCAACCTTCTCATAGGTGGCTCCCT 2376 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 12 36 100.0 39 GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Left flank : CTATCTATGGGAATAGTTACATCTATCTTTAGATAGATATTTGGGTAAGATAGGGATTTGGGTAGGTATTTTACGACATTTTATCTAACCTAAAAACTTTTATGCGAGTAATGAAATATCCCAGTCAATGTAGTACCTAATGGGGGGTGAGAATGAAGTGGTCTCAAAAAAATAAAATATACATAAGTTTTAGGGAATTATTTTCCTGTAAATGTGTTATAATAGTGGCACAAATGGGGAAAAATCGGTATAAATATTTCAGTAATAGTAAAGNATAATGATAAAAATAAAGACANAAAAANCAGTAATTAACGAAGANANTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTTGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTAGGGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTTGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : CTGACAAACCTTAATGGGACGGAGCCCTTTACTAATGNGNCNNGNCCTTNNNNNNANGNNNNTNGNCCTNCATAAGAAGGAATAGGTATTACGACCCTTTATCGCTTTCCTATCCCTTCCGCTATTAGAGAAAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACATTAATATTCTCCTAGATATGTTTTAATCGAACAAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACTCGGTCACGCCATAAAGAGTTTCCCAAAACTATGAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACGGGCTTTAAAAAAAAGTTATTTATCCATAGATTATAAATAAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACAATAACAAAACTACCAAAGGAATTAGTAGTAGAGAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACGTAGAGAATTTTAGGGCTTGGGTAGGGACATATTTTTGTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 2544-4415 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFE01000065.1 Cylindrospermopsis raciborskii CS-506_C scaffold500, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2544 36 100.0 35 .................................... ATTAATATTCTCCTAGATATGTTTTAATCGAACAA 2615 36 100.0 35 .................................... TCGGTCACGCCATAAAGAGTTTCCCAAAACTATGA 2686 36 100.0 41 .................................... GGGCTTTAAAAAAAAGTTATTTATCCATAGATTATAAATAA 2763 36 100.0 35 .................................... AATAACAAAACTACCAAAGGAATTAGTAGTAGAGA 2834 36 100.0 37 .................................... GTAGAGAATTTTAGGGCTTGGGTAGGGACATATTTTT 2907 36 100.0 38 .................................... AGATAGCCGGAATCTTATACCCTTGTGAATCACATTTT 2981 36 100.0 39 .................................... CCTATGGGTGAAGTGTGGGTTGCACAAAGTAATGCTCAA 3056 36 100.0 36 .................................... TTAGGATAGCGAGCTTCTATCACATTATACTGTGAA 3128 36 100.0 37 .................................... CTGACTGGTTAACAGAAACCAGTTTTTTGATCTGGTT 3201 36 100.0 38 .................................... GCCCTGGGACAAACAGGAGCTTCTTGTTCCAAGGGAAA 3275 36 100.0 39 .................................... GGTTGAATATCTTGAGTAGTACTTCTCTGAATTCAAACA 3350 36 100.0 35 .................................... GTGTACCTCCTTTCTCCGTTAGCCTACTGTTTAAC 3421 36 100.0 44 .................................... CCCCTTACTGCTTCCCTTTTACAGCCGCAATATAATTTTGAGAG 3501 36 100.0 36 .................................... TGGGGTTGGGTGTTCATTGTTGTGGGGGTAGTGTGG 3573 36 100.0 38 .................................... ACGTTGTTGGGTTCGCCCAAGCCTGGAAACTTCAGGGC 3647 36 100.0 35 .................................... TATCAAAGATAAGTTCTCTACAGCAGGGGCAATTA 3718 36 100.0 36 .................................... CAGTCAGAGGCGCGGGTTCCAGTAATTTTAATAAAA 3790 36 100.0 39 .................................... CAGCAGCTTTAGAAGCCTTAACGGCTGCTTTGGCATCTA 3865 36 100.0 34 .................................... CTTCAGGCACGTTTTTAATAACCACCAGCTTATT 3935 36 100.0 35 .................................... AGGAGTTAGCTACCGCTCTGCCTGCGATTAATTAA 4006 36 100.0 40 .................................... TTTGATGTGGGGGTTGTGGAGAATCTGAAAAGATTTACGT 4082 36 100.0 40 .................................... GAAATAACCGGGTAAAGGGAAATAACCGGGTAACCAGATA 4158 36 100.0 38 .................................... CTACCTTACTCGTCTGTAGAGCGATAAATTATTTCTGA 4232 36 100.0 35 .................................... GCTAGGAGCTGCATATTTCGTGGGGTTGGTGGGGT 4303 36 97.2 41 ...........A........................ AAGCCTTTACGACCCTCGGCAGTGTTAGACTCATGCAGCTT 4380 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ============================================ ================== 26 36 99.8 37 GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Left flank : CTTTCTAAAAACCCAAGTCTAATGCCTTTAGTACAAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACCACCCTGTTTCGATGGCATCGTTGTGTATAACTTCAAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACTTTTTGACGACCCGAAACTCGGAAGGTATCGCGACTGAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACCCAAAGGTACAGACTTAGCCACAGCCTCAGCTTCAGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACTTACTTTTCTGAGGAAACCAACCTTCTCATAGGTGGCTCCCTGTCTTGACCTTCATAAGAAGGAATAGGTATTACGACTGACAAACCTTAATGGGACGGAGCCCTTTACTAATGNGNCNNGNCCTTNNNNNNANGNNNNTNGNCCTNCATAAGAAGGAATAGGTATTACGACCCTTTATCGCTTTCCTATCCCTTCCGCTATTAGAGAAA # Right flank : TTATCTAATGCTATGGGACTAAGAGGATTGCAGCGATATAGTCTTGACCTTGAAAAAGGCAATTCTTCAAGAGTTGCAATCATCGTCATAATATAGCAGGAGTAAGTGGGTCAGTATACTTGGGACCAAGTTGTCAATAAAAATACTATGACTGCGCTGATGGCTAGGACACCTTGAATCAAGTTTCCCACCAGCGTTCCCACAGTGATTCCAATACCAGCTTTCACCGCAGGCCATAATCTTCTTTGGTAAAGGAACTCACCCACAATTGCTCCTAATAGAGGTCCAAAGAGAATACCTAATAATGGTCCACCAAAAGGTAAAGCGGGTAATAGTCCAAAAAATCCCATCAGTAAACCCACAAATGCGCCAATTTGTCCCCACTTACTAGCACCCGCTTGTTTCGCACCAATATAACCAGCAAGGAAATCAACTCCTGTACTTAGAAGTAAAACAATGATTGTCACAATCAGAGGAATTTTAATAGCAGCAAAGGAGTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 577-387 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFE01000378.1 Cylindrospermopsis raciborskii CS-506_C scaffold440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 576 36 100.0 38 .................................... AATTGGTTGACAACCAAAAAAAGGTGTGTTATGGTAGT 502 36 100.0 44 .................................... TGGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATA 422 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 3 36 100.0 42 GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : TTTAAAGTGTGATATTTCTTGTAATGGCATATTTATGAGCATAAAAGTGGAATTAAACATGAACGTAGGTTGGGTTGAGGAACGAAACCCAACGCCCCCATGGGTTACCCTACCCCTAACCCATCCTATTTCACGGGGCGATCTCGCCAGTGCGAGTGCTTCGCAATCGCTTGATTACTTGATTTTCCATTATATGGTGTCCAATAAGACCTGCCCACCAGTTATCGAGTTCGGAGGGGGGTATACCCCAGGTGCCATTTCTTAGGAATTGGGTGGGTTCTGGTTCCATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTCTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAA # Right flank : CGTAATAAGGTTGTTTCCAACAACTTTATTGCGTGATTTTGTTTACCTCGACGTTTGCCATTCTTTCTGATTTTGGAAGACCCGCAGTTTGGACAATGCACAGTAGATTACCTCAATTCATACCTCTATTATGCAACGCCAAAAATCGCTTCTGTTTCGGGAATTTTCTTGATAGGCTTGGTTTTCAGAACTCATTTTAAGGAATTAAAAAAGGCAAAACTATTGAGTTATTAGAGGAAGTTGATTTTCCTGATAATGAAGAGGTATTAGTGGAAATTAGAGAGGTTAATGATTTTTGGTCAGCCTTGCAAGATTTTAAACAAAGAGTAGATTTGGCAAGTCTTGATGATGATACTTTTGATAATTTACGGGACAAGTCAACGGGGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2260-463 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFE01000681.1 Cylindrospermopsis raciborskii CS-506_C scaffold76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2259 36 100.0 39 .................................... TTAATGCAGCTCGTAGCTGCTTCTCCTCCACCTTTAAGG 2184 36 100.0 35 .................................... TTCTATGGGTTGGGAAGATAGTGGTCAAGTATCTT 2113 36 100.0 36 .................................... TTAAAAGGAGAAAGGGAGTTTTTTATTTCCCTGTTT 2041 36 100.0 37 .................................... TATTTCCCATTTGATCCAGAAATATATTACTGTGCTT 1968 36 100.0 34 .................................... TTAAAAAATCCGTCAAACATTGTTATCAATCCAT 1898 36 100.0 36 .................................... TTTACAGATTGAAGCCAAGAAAGATTTGAGCAGACC 1826 36 100.0 41 .................................... TTTTAGTAATCGCGTGTTTTGGTTGCTCTCGGGTACTGAGA 1749 36 100.0 40 .................................... AGGAAAGGATTTACTGAATCTGGTAGGGAGTGTTGGGTAA 1673 36 100.0 36 .................................... TTTTGTTTTTCGGTTATGAGCTACAAAGAGTCAGAT 1601 36 100.0 41 .................................... ATATTTTGACAGTTGAGAGCGAGTCCAATTGCGTTCCTCTA 1524 36 100.0 38 .................................... AAAAATTTTTAGTGCCGAATGATAGTCGTGTTCTTGAG 1450 36 100.0 38 .................................... AAAAATTTTTAGTGCCGAATGATAGTCGTGTTCTTGAG 1376 36 100.0 39 .................................... ACCCGCAATATCCAAATCTATCAATATTGATTTTATGTG 1301 36 100.0 36 .................................... GGGACTACATCTTTGTATGTAGGCTCTAACACGAAA 1229 36 100.0 41 .................................... GGCACGAAGCCAAGACACTGCCTCCATTCGGCAGCGGTTAT 1152 36 100.0 35 .................................... GCCTCTAACCAGGCTTCAAAGATCCTGGTTACCAA 1081 36 100.0 39 .................................... CTCGTATGTATAATGATATCCAACAGATAGTGTATTCAT 1006 36 100.0 34 .................................... TTAAAAGGGGAATAGGGGGGGTATAAGCGGGTTA 936 36 100.0 37 .................................... TTAATGTTAATGAAATAGTCGATCTTCGGCCATTCAT 863 36 100.0 38 .................................... TCTATATATTCTTTTCTTAAACAACATTTTCAAGAACT 789 36 100.0 39 .................................... ATTTAATAATCATACGGGTTACCGCTTAAACAAATAACG 714 36 100.0 35 .................................... TTAAATACAAGCCATCTGCCCTCGAACGGGGTTAT 643 36 97.2 37 ................A................... TGGGTCTACCGCCCGCACAAGCGGAGGGGGGGGTAGG 570 36 100.0 36 .................................... AAGTAAAATTTTTAAAGGTAAAGAACACTTTAGGGA 498 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 25 36 99.9 37 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : CTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGATGGTGCGGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGG # Right flank : CTTTTTAAGCGTTCATTACTACTGTTATTTCCCTAGCGCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACAACCCACTCCCACAGCCAATCCGCACCCCATCCATTAATCGCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAACACAATTTTTTCTCGCTTAATCAGCTCATCTTCATTTTCAAGCGCGATTACCTCTGGGAAGTGGAATTAATAGAGCTGTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGATCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATCGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGGTCACACGATTCCTATATACATAATGTACAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 152-1900 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFE01001017.1 Cylindrospermopsis raciborskii CS-506_C scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 152 36 100.0 44 .................................... CTTCAATACTATGCCTTCAGTACCTTCTCATTTACTCATCTCTG 232 36 100.0 36 .................................... TTGGAGGAGTGTGTAGACTCCTTCCGCCGGTTAAAA 304 36 100.0 41 .................................... GAATAGATACAAAGTATATAGGCTACGGTAGCCGCGCGGCT 381 36 100.0 33 .................................... ATTTTACTAACTCACGAGCTAGCCCTTGTTTTT 450 36 100.0 40 .................................... TTACATTTTTGGTAAATTACAAAACTGCTACAATTCTAAA 526 36 100.0 39 .................................... CTTTTAAAGCGTGGCAGAACGCAATAAAAACCAGTGGCG 601 36 100.0 34 .................................... CTTTTTTGCCCTTCCAAGACAAGACTCCGCTTCT 671 36 100.0 39 .................................... TAACTCCTCAAGAAGGATTACCTCTTGAGGTTGGAGAAA 746 36 100.0 39 .................................... ATAACTTGGGATCATTACTGGGATTAACGGGATAAGAAC 821 36 100.0 39 .................................... TTTTTGGCCTTTTCGGCCTCAAGGAGATTTTTATGAGAT 896 36 100.0 35 .................................... GACATAGAGTCAGCTAAAAAATATTCCTAGTTTAA 967 36 100.0 38 .................................... TTTTCTACCTAAATGGAGTAACTCCATTTATCTGTTCC 1041 36 100.0 42 .................................... TCATCTCAGTAATCAAGGGTAGTGGGACAAGCGATTACTAAA 1119 36 100.0 50 .................................... GCTTAACGCCACCGCCTTGTGCCAGCCACCCACGTTACGGGTGACCACTA 1205 36 100.0 36 .................................... GTAAGAGGTGGTAGTTGGGCATCTACAATGGAAGAA 1277 36 100.0 37 .................................... CCCGCCCCAGTGAGGGTTTTTTGTTGTCTAAAAATAT 1350 36 100.0 39 .................................... GGATCTGGTTTAGGGTGAGTAGAGAGAGTAGGTTTAAAA 1425 36 100.0 38 .................................... TGGGCTTGCTCGATGGATTCTACTTGAAAAAGTGGAGC 1499 36 100.0 38 .................................... CCTCAGAACAAAACGCAACCGCGTTGAAAAACAAGAAA 1573 36 100.0 35 .................................... GCGGTTACTGTAACTGTAGGCTGCGCGGCTACGGT 1644 36 100.0 36 .................................... GCGCTCCCCTTTCATTAAACTCTTCAAACTATCCCT 1716 36 100.0 36 .................................... GATTTAAATGAATTTAAACGGATCTAAATCGATTTA 1788 36 100.0 38 .................................... TTCCTCTTCCTCTGCCTGACGGTAGAGGAGGAGGGCTG 1862 36 83.3 0 .......................CT..CGG.....A | A,T,C [1888,1894,1897] ========== ====== ====== ====== ==================================== ================================================== ================== 24 36 99.3 38 ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : GCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAAGGTAGTGGAGGTGAAAAACAGATAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGAGCAAGGGCTTAAAATGGAGGGA # Right flank : GTGGTCAAACAGCTTGTTTAATAAGGGATAGAGCCTGAAAGCCACGCTGGAAAAAGAGGCGTTTATGAGGTTTGAGACCGATTAAGNTCAGAGCTAAATCAGCCCATANTTCCATGCCATAAATCCATAATTGTCCGTAAACAGCAAAGCTAAAATCACTCTGACGTGGGTAATTGTCCTGATGTTGTTGAATCCGTCCGGCATAAGTCTCTATCCCTAATTTTTTCATCCGTTGACCGTACATAGTGGCTAAACTATAAGCAATCACAATTAATAAAACTAAGGCTAAAAAACGAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 12527-10429 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFE01001024.1 Cylindrospermopsis raciborskii CS-506_C scaffold196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================ ================== 12526 36 100.0 37 .................................... GACCAACTCGCCAGAGTTGGGTTGCAGGGATTACGAT 12453 36 100.0 35 .................................... TTGTTAGTGCCGACCCACTTCCTGAAGAAGGAATT 12382 36 100.0 38 .................................... TAGAAAGCTCCTGGGGGTGTCCGCTGGTGCTACCAAAG 12308 36 100.0 64 .................................... ACAGATAGNTNCNGANGGAAGCGGGGACAGATAGATGCCCTAACCCATGGAAGTAAATCCCTGG 12208 36 100.0 34 .................................... TTATTTTTTGGAGATTGATTATGTATTTATCAGA 12138 36 100.0 36 .................................... AAGTAGCCGCGCAGCCTACAGTTACTGTAGATGCTG 12066 36 100.0 36 .................................... ANNTANCCGCGCAGCCTACAGTTACTGTAGATGCTG 11994 36 100.0 39 .................................... ACCTGTCCAATGCTATCAATGGACAAGGAAAGAGGTACA 11919 36 100.0 38 .................................... TTTTTAGAAAATATTTTAAAATAGCTGGAAGCCCGTTG 11845 36 100.0 37 .................................... CGACTAACTGAAGATTCCATTTCGGAGAAGTTGCAAA 11772 36 100.0 36 .................................... AAAAAGAGCATTGATTCCAACAGCAGTGTTATTTCC 11700 36 100.0 36 .................................... TCCAGATAATGTATGGGACTATCCCTCATATACACG 11628 36 100.0 39 .................................... ATTTGTACGCAACAAGCTGTAAAGTCAATTTATTTTTTC 11553 36 100.0 35 .................................... TTATTATGGTGGTCCAGTGGATCATCAAATCATAG 11482 36 100.0 35 .................................... TTTAAATCAACTCCATTATTGTTATATGCTTCAGC 11411 36 100.0 39 .................................... TTTCGTTCTCCTATTCATTCAGGAGCTATCTTAAAGATT 11336 36 100.0 39 .................................... CTAAGTATCTAGGTAACACTAAATTAAGAGTTTCTGTAT 11261 36 100.0 40 .................................... AGTCGCCTACGGTAGAGCTGTGTCTACCGATTATTAGTCC 11185 36 100.0 37 .................................... GTATTAGATAGCAATGCCAATGGACAAATAGTAGAGG 11112 36 100.0 34 .................................... CAACCTTGATAATAGTTTAAAAAACAACTATTAT 11042 36 100.0 37 .................................... GCTTCATGTAAGCGTTTCCAGGTAGGTATGAGACTAG 10969 36 100.0 37 .................................... AAAGATATACCAAAAAAATATTTTGGAATTTCAGTGT 10896 36 100.0 37 .................................... CTCTTGCAAGAGATAATTTCTTAGGACTCTTCGGGAG 10823 36 100.0 35 .................................... TTATAAGGCTCTTGAGCTTGAGTATGAGGTGGATC 10752 36 100.0 29 .................................... ACTGTGGTGGCTGTGGGGGCTGTGGGGTG Deletion [10688] 10687 36 100.0 38 .................................... GTTTTAATCTTCTATGGTTGCGCAAGTTAAGCTAGTTC 10613 36 100.0 36 .................................... TAGGAAGTGTCCCTTGGAGTTTTTTGGGCATGCCTC 10541 36 100.0 41 .................................... CGGACTGTTTAGAATCAGTTGTTTTAACTGTCTCCATGTGT 10464 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================ ================== 29 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTGAACTAAGGATATTTTAGCGCAGAAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCTTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : ACCTCCATTTTAAGCCCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAATTTTCTCTGTTTTTCACCCCTACCACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCCTGACCTTCGCATTCCCTTCGTTAATCACTGAATTTACTGTCTTTAATATCACTTTAACCATTAATCAATAATCTCAATACTAATCCTTAATTAATCCTTCCATTTATTCTATTATAACTGATTCATGCTCAAATAACTGGTATTCAAAAACAAAAAATTTATTGTATATTTTATTTTTGCTTAGACTAAAGTAAACAAATATCATATAGATTAAAACTTTACCTAACATGAATACTCAGATAATAATAGAATTGGGTAATTGCACTATGGGTACTCCCACTCCCCAAGCTTCTATTTGAGGAATGGTATGTTTAGACAAAGGATAAAATCTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 138-2691 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDFE01000972.1 Cylindrospermopsis raciborskii CS-506_C scaffold359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 138 36 100.0 43 .................................... AAACCATATACTATTGTTTATTAAAGTTAATTAACCTAAGCAG 217 36 100.0 33 .................................... CCGGGGGCTTTGTCAATGGAGTTGTACGACTAC 286 36 100.0 37 .................................... ACGGTGAGTCCCCGGACGTACGAACTCTTGTTAACTC 359 36 100.0 34 .................................... AACCATATATGGACTCCTCCCGGAGTTTCCTCTA 429 36 100.0 36 .................................... AGTAGAGGGGGGGTAGAAAGAAGGTTCTAAGTCAAG 501 36 100.0 39 .................................... AGGGGGAGCCGCGCGGCTACCTTCTTAGGATTTAAAAAT 576 36 100.0 39 .................................... TACTCTTGTGCGCCCAGTTGAGCGCATAGGATCGCGGCT 651 36 100.0 46 .................................... CTGCTGAAGTCTATTAGAGTAGATGGTTACAAAAGTAACTAATTAC 733 36 100.0 37 .................................... TACCCCCTCTATAATAACTGACACTATGTAGTATTCT 806 36 100.0 39 .................................... TTTAAAAGGAGCGACAGGGTCAAACTTTAAGGTAGTAGT 881 36 100.0 35 .................................... TATTCTTTGAAAAATTATTTAGTTGGTATCCTCTC 952 36 100.0 41 .................................... AAGACTTTTCGTTAAACAAGAGGTTTATTGTAGGTAAATAT 1029 36 100.0 37 .................................... AAACCCCATCTAAGCAGGGGCTTCGATGGGGTTTTAT 1102 36 100.0 37 .................................... CATAAACTTTTACCAGTAAACTAACTCAACTATAACT 1175 36 100.0 41 .................................... TACCCACATGGGGTAGAAGTGTACCATTACGGGGTCGTTTC 1252 36 100.0 35 .................................... TATTTTCTTAAACAGTTACTCGTTTAAACTTTTTA 1323 36 100.0 40 .................................... TAATTTTCTAATGTTTTTCCTTCGTTTTGCCCCTATAATT 1399 36 100.0 36 .................................... TAGACTCACTTCCCGCTCAGAGTTTGATACTTGGAT 1471 36 100.0 39 .................................... TTTTTCGGCAATCTCTCCAGACCCCCGCAGCATGTTTTT 1546 36 100.0 36 .................................... AGATGACTGGCCCAGAATTGTGCCGTACTAACTGGT 1618 36 100.0 41 .................................... CTGGATTAGCTTTACTGGATGTCAAGCAATTTGACCTAACA 1695 36 100.0 38 .................................... GCTTTGTGAGTGCTGCTACACAATCTAAAAAGAATGAC 1769 36 100.0 34 .................................... TAACAGGGTTTGAAGAAGAAATCATCCTTTACAG 1839 36 100.0 35 .................................... CAAATGGTAGAGTCTCTTAGGGAAAAAGGTAGGAG 1910 36 100.0 38 .................................... CAATAAATTAGTTCGGTTAAGCCTTCGGGCTTAAGAAG 1984 36 100.0 38 .................................... GTAACAGCTATTGAAGAGACTATGGGTCTTCAATATAT 2058 36 100.0 42 .................................... ACTAGATCCACTGGTTTTGATAAATAGTCGAAGATCGACTAT 2136 36 100.0 37 .................................... GAATTATAATGTAGAGGAGGGAAATTGGGGGTTAGAG 2209 36 100.0 37 .................................... CGTGGATAACTACATCCTCTTCAAGAGTTAAACCTTG 2282 36 100.0 39 .................................... TCTGAAGAGTTTTAAGCTCCAATATGTTTTTTTGTGTTT 2357 36 100.0 39 .................................... AGGCTAAAACAATAAATCCAAAAATCTCTTTCTTTAACA 2432 36 100.0 41 .................................... CACAGAGAAATCCTGTGGTATAATCACAGAACGTTCTACCA 2509 36 100.0 37 .................................... TGATACACTTGATAAACGCTGATTTGACTATAAAAGA 2582 36 100.0 38 .................................... AGATCTCAACTCTCTCCTTAGCGATAACGATCTCCCCT 2656 36 88.9 0 ..............................A..GCT | ========== ====== ====== ====== ==================================== ============================================== ================== 35 36 99.7 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : CGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACTAGTCAGGGCAAGGGCTTAAAATGGAGGGG # Right flank : GTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATAGCCCTGCAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //