Array 1 240996-239825 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUR01000023.1 Salmonella enterica subsp. enterica serovar Typhimurium strain OLF-FSR1-ST-44 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 240995 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 240934 29 96.6 33 .......T..................... CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 240872 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 240811 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 240750 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 240689 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 240628 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 240567 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 240506 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 240445 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 240384 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 240323 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 240262 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 240159 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 240098 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 240037 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 239976 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 239915 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 239854 29 96.6 0 A............................ | A [239827] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 258743-257128 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUR01000023.1 Salmonella enterica subsp. enterica serovar Typhimurium strain OLF-FSR1-ST-44 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 258742 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 258681 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 258620 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 258559 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 258498 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 258437 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 258376 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 258315 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 258254 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 258193 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 258132 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 258071 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 258010 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 257949 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 257888 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 257827 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 257766 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 257705 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 257643 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 257582 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 257521 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 257460 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 257399 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 257338 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 257277 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 257216 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 257155 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //