Array 1 108193-106838 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZJ01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CR516 NODE_5_length_170988_cov_105.619155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108192 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108131 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 108070 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 108009 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107948 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107886 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107825 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107764 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107703 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107642 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107581 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107519 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107416 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107355 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107294 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107233 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 107172 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 107111 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 107050 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106989 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106928 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106867 29 96.6 0 A............................ | A [106840] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126184-124325 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZJ01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CR516 NODE_5_length_170988_cov_105.619155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126183 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 126122 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 126061 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 126000 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125939 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125878 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125817 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125756 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125695 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125634 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125573 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125512 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125451 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125390 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125329 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125268 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125207 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125146 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125085 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125024 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124963 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124902 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124841 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124780 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124718 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124657 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124596 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124535 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124474 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124413 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124352 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //