Array 1 54786-54972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJT01000005.1 Pectobacterium brasiliense strain B6 B6.scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 54786 38 100.0 36 ...................................... AGCTTCCTGCTCACCACCCTATGGGTCGTTGCTAAC 54860 38 97.4 37 ......C............................... TGCCATCCCTGGCCGCCACCCTAACGGGCCGTCGCAA 54935 38 97.4 0 ..G................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 3 38 98.3 37 GCAACGTTGAAAAACGTTCCCTACGTTTTTTTATGGCG # Left flank : GTCAGGAACGCAGCGCCTGGGTTCGGGCAAAAACTGCCTGTGAAGTGGCTGAAATTTCCTATAAAAAATTCCGCCAGCTCATCCAGGTTAACCCGGATATCCTCATGCGTCTGTCTGCGCAAATGGCAAGCAGACTTCAGGTTACCTCTGAGAAAGTCGGCAACCTCGCCTTCCTTGATGTGACCGGCCGTATTGCCCAAACCCTACTCAACCTGGCCAAACAACCTGATGCCATGACGCATCCAGATGGCATGCAAATAAAAATTACCCGTCAGGAAATTGGGCAAATCGTTGGCTGCTCGCGTGAAACCGTGGGCCGCATTCTGAAAATGTTAGAAGACCAGAACCTGATCTCTGCACACGGTAAAACGATTGTCGTTTACGGCACTCGCTAAATCCCTGTCGCTGTACCCTACCAATAAAAAAGCGTGAAGCCTCGGCCTCACGCTTTTTTTATGGCGTGCCATCCCTGGCCGCCACCCTTACGGGCCGTTGCTGAC # Right flank : GTAACGTAATCAGTTTGCTGCGTTAACGACCTGCGCGACGGCTTTAGCGAATTTCGCCATCCCCTGCGCAATATCATCTTCATCAATGATCAACGACGGTACAAAGCGGATCACATTCGGCCCAGCCATCAGCACCATAAGCCCCTGAGACGTTGCCGCCGCCAGAAACTCACCCGCACGACCATGCCATTGCGGTTTCAGTTCTGCACCCAGCAGCAATCCCATACCGCGAACCTGTTCGAATACACCGAACTGCTGATTGATTTTCTCAAGCTCGCTGACAAAGCGATCGTGGCGATCCGCAACGCCTGACAGCACTTCTGGCGTGTTGATAATATCCAGCGCGGCTTCCGCCACCGCACAGGCCAGCGGGTTGCCGCCATAGGTGGTGCCGTGTACCCCAACCGTCATGGCCGACGCGATCTCTTCCGTCGTCAGCATCGCGCTAATTGGGAAACCACCGCCCAATGCTTTAGCCGTTGTGAGAATATCTGGCGTAA # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAACGTTGAAAAACGTTCCCTACGTTTTTTTATGGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 169511-170499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJT01000004.1 Pectobacterium brasiliense strain B6 B6.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 169511 28 100.0 32 ............................ CATCCTCGCGGTCATAATTAAGATTAGTAACC 169571 28 100.0 32 ............................ CTCCCGCTTTAAATTATCGGTTTGTATTCCGC 169631 28 100.0 32 ............................ GGATAGAGCGACAGCCTTCTAAGCTGTAGGTT 169691 28 100.0 32 ............................ ACCTACGCCAGATTGGCGATCTGGTTGGTCAC 169751 28 100.0 32 ............................ TCCGTCAATAGCTTCTTGTGGCAGACCAGCAA 169811 28 100.0 32 ............................ TGTACGTCAGGGCGCGATCGAAATCTGGGAAA 169871 28 100.0 32 ............................ GCAGACGGCAAGTTGTCTATGCAACAGTTTGC 169931 28 100.0 32 ............................ GGAACGCGCCAGAAACCATCGCAGAAAACGTG 169991 28 100.0 32 ............................ TGGCGCACAAAAACCAAAGTGGAAATTTACAT 170051 28 100.0 32 ............................ AAGAACGGTACTTATCCGCCACGTTCATCAGA 170111 28 100.0 32 ............................ AGCGCGTCAAGGCTGACGTAATGACCACCCTT 170171 28 100.0 33 ............................ CCTGAGCGCATGCCGCAAGAGTTCGTCGATAAA 170232 28 96.4 32 A........................... GGCTTACCGTCAACGCGAGTTACGCCGCCGCA 170292 28 92.9 32 A..............A............ ATTCACGATGACGAACGGCCGCCGCATCGATG 170352 28 89.3 32 .G......T..C................ CACGGAACCAGCGGCAGCTTGCCCGCATCAAC 170412 28 96.4 32 .............C.............. ATGCGAGATTTTCTCAATGCGAAAGAAGAGGT 170472 28 85.7 0 ...........AGC........A..... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCATTCGATTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCATCGATAAATAAAATCTTTGCCATACGCTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 176609-176401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJT01000004.1 Pectobacterium brasiliense strain B6 B6.scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 176608 28 100.0 32 ............................ AACGATGCGACCGCAGATATCAAGTTGCTCCC 176548 28 96.4 32 ...........G................ ACATTCGTAAACGTGCGGGAGAAATACGGCTC 176488 28 100.0 32 ............................ AGTCGTCGTGCAGATGACGAGAACCAGCGCAA 176428 28 75.0 0 ...........T.C......T...TCCC | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCATTAGAGTGATCGGGCTACA # Right flank : CTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAGCACTATCGTCAGTATTTGATGCGTTATCATCGTTAAATAACGTATTTCTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGGAAAATTGCGGACTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGACCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCAT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 185175-185682 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJT01000004.1 Pectobacterium brasiliense strain B6 B6.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 185175 28 100.0 32 ............................ CCAAACCAACGACATCCTTACCGACATGTTGT 185235 28 100.0 32 ............................ ATTCTATCGCCGAGGCGGAATGGATTCCCCAA 185295 28 100.0 32 ............................ ATTACGCAACACTGAAGCGCGGCAGTTTTGAC 185355 28 100.0 32 ............................ ATCTCTCACCAAATCATTTAACTCAACATGCC 185415 28 100.0 32 ............................ GCCCCCGTTAACAAAGTCAGGCAGGTGGTTAC 185475 28 100.0 32 ............................ CGCAACGCGGCACACGGCGGACGTGGGGCTAT 185535 28 100.0 32 ............................ TTGACGCCGCCTTTAGGTTTAAGATGTTTGGT 185595 28 100.0 32 ............................ GGTGAATTGATCCGCGACGTAACCGGCATTAT 185655 28 78.6 0 .............C........A.ATGC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCGACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGCAAAACCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGTTAACGGAAGCAGAAGCCGCAGCACGAATTCCCGATGCCGTAGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTATTTGTGGAACATGGCCCGTTACAGGACGCCCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTTCCCTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : CTTATCGGGATGCGTCGCTGGTGCGACGCATTTTAGAGGCTATTCCCCGTTGAGGGTGACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCACCAGTATTTCGTCAGTCACCAGATGAAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //