Array 1 164652-163493 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JYGP01000001.1 Streptococcus mitis strain OT25 TZ90_contig000001, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    164651	    36	 100.0	    30	....................................	CGTTGTTGATTTCATCGTATACGAGAACAA 	
    164585	    36	 100.0	    31	....................................	ATAAGCGTAAAGCTTTAGATAAACACTCTAC	
    164518	    36	 100.0	    30	....................................	AATTGTTTTAGTATGCGCCTGATTACCGTC 	
    164452	    36	 100.0	    30	....................................	AAGTTCCACTTCTTGTCAATCTCTGTGTAT 	
    164386	    36	 100.0	    30	....................................	CACAATTCACATCCGTGTTGTTTCGATTCA 	
    164320	    36	 100.0	    30	....................................	GTTCCGCTCTATCAAAGTTTCTAGTGATGG 	
    164254	    36	 100.0	    30	....................................	AGCTTGCCGAATGGAACGTTGAGTTACTTT 	
    164188	    36	 100.0	    30	....................................	GCAAGTAGAACGAAATATTCCTAAGAAATA 	
    164122	    36	 100.0	    30	....................................	AGACGTCCATAGTTCCCCTCGTTATTGGTT 	
    164056	    36	 100.0	    30	....................................	TTCATTCTCAAATCGCTCTACCAATTTCTC 	
    163990	    36	 100.0	    30	....................................	TGCAGATAAGATATTTCCACCTCGTCTAAA 	
    163924	    36	 100.0	    30	....................................	CGGTGGCGGAGGCAAAGGTGGTAAAGGAAA 	
    163858	    36	 100.0	    30	....................................	AATCCTAGGAGAACTCAAGGATGAGCAAAC 	
    163792	    36	 100.0	    30	....................................	GAGTCAGCAGTACAGCAAGTTACAGCTAGA 	
    163726	    36	 100.0	    30	....................................	TATCGGAGAGTGGTTTTCTGGTGTATTCCA 	
    163660	    36	 100.0	    30	....................................	ATAGTCAACCGCTTTTCCTCAAATAGAGGT 	
    163594	    36	 100.0	    30	....................................	CTTGACAACCCAACAGAGAGAGGGCTTGCG 	
    163528	    36	  94.4	     0	.................................CT.	|                              	
==========	======	======	======	====================================	===============================	==================
        18	    36	  99.7	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   ATCAACTCAATGACAAGCCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGTTTGGAAAACGAGTTAGACCTAGAATATGATGAAATTACCATTCTAGAGTTAATCGATTCACTTGGTGTCAAAGTCGAAACCCTGAGTGATACCCCTTTTGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAGTATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCCGCCTATCTATCAAAGGATGAGTTAGTAAATTTGATAGAGTATATCCAACTCAATCAACTGTCCGTCTTGTTTGTTGAGCCTCGGAAAATCTACGATTTTCCCCAGTATGTATTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGGACCTGACGAGCTGAAGTCTGGCTGGGACAAATGGCGCGATTACAAAATTTCGTGAGAAAAATTTTTCTACGAG
# Right flank :  ACATTAAAAGCTACTCATTTTTTAAGTAGCTTTTTTCTTATTCAAGTTTACATATTAGTCGTCAAAACCCCATTCCCCTGTAGAGAAGCAAGACTGCCAATCCTACGAATAACACTACCGCTCCTAACCTCTGGCTGCTACTATACATCCGTCTTTCTCCTCGGACTGGAAAGATAATTGCTAGAAATGCTCCACCAACTGCTCCCCCGATATGGCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATAATGTTAACCACAAAAAGTGTCAGATAAGATTGCCCTAGCTGTTGGATATAAGGATTACGCGTTGCATAGCGAAGAATGATAATCGCAGCAAATAGCCCATAAAGAGAGGTAGAGGCTCCTGCTGCTAAGGATTTGGGACTAAATACAAAAACAAAGAGATTGCCCATCATTCCTGATAAAAGATAGAGAAAGAAAAACTTCTTGGATCCGAAAATTTCCTCTACTTGCCTACCAAGATAATAGAGC

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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