Array 1 354721-353092 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUHU01000002.1 Derxia lacustris strain HL-12 isolate fresh water ctg_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 354720 37 100.0 35 ..................................... ATGGAGGCCCGCATGGGTGCCAACACCACCGACGA 354648 37 100.0 37 ..................................... GAGGGTCGAGCTGCCGCGCTCGGTGTCGATCACCGCG 354574 37 100.0 35 ..................................... CGCGTCGCGAACGACGACGCGACCGAATGGGCCGA 354502 37 100.0 35 ..................................... CCGGCGACGTACCTCGACATCTCCGTTGTCGCGTC 354430 37 100.0 36 ..................................... ACGTACCGGCTGTGCGTCACGCGCGACTCGGCCAAC 354357 37 100.0 35 ..................................... AATGCGCTGGTGGTGGACGCGTAGCAGGTCGAGCG 354285 37 100.0 34 ..................................... CCGGCAGCGATGCCCACACGCGCGCGCATCGCTC 354214 37 97.3 36 .........................A........... AACAGCATGCGCGACGAGGTGCCCCAGTTGCGCGAG 354141 37 97.3 34 .............T....................... GTCCATGCGTTGGTCTGCTTCACCACGCCCACGA 354070 37 97.3 34 .............T....................... AGGGTTTCGAGCAGCAGCACGAGGTCGTCGATTT 353999 37 94.6 36 ..............A..........A........... ACAATCATCGGCCGGGTGCTGTGGGTCTGGCGCGGC 353926 37 94.6 34 ......G.......A...................... TGGTGATTGCGGTCCTGCCGCGTGAGCACCTCGT 353855 37 97.3 36 ..............A...................... ACCAGCCCAGGCAGGAAAGCTAGGAACGCGATCGGG 353782 37 97.3 34 ..............A...................... TCGCGTCGATCGACGCTCAGGTACGCCCGCATGC 353711 37 100.0 36 ..................................... TGCGATGGGGTCGGTGGCACAGACGTGATTGCCGCA 353638 37 97.3 35 ......G.............................. CTTGCGCACGTTGTCCCAGTGCTTGAGCCGGCGCG 353566 37 94.6 36 ..............A.................C.... GTGCGTCTCGCCGGGCTGCAATCGCGCCTCGCCGGG 353493 37 100.0 37 ..................................... CGGACCAAGGTGCTGGGCGACCTCGAAAAGGCACACA 353419 37 97.3 35 .........................A........... TTGTAAACGAGAACGGCGGCAGTCGCGAGCGCGGC 353347 37 97.3 37 ..............................C...... CGCAGGGCGAGGTAATCGCGGGCCTGCTCGGCAGACA 353273 37 100.0 35 ..................................... ACGTGGTGGATTGACGGATTACCGAAAGACAATGG 353201 37 94.6 36 ......G.......A...................... GTGAACGTGGTGCCGCCCAGCGTCAGCATGATGCCG 353128 37 83.8 0 ..............AG.C..C......C.A....... | ========== ====== ====== ====== ===================================== ===================================== ================== 23 37 97.4 35 GCTGAATTCACTCCGAATGGAGTGACTTCGTTGAAGC # Left flank : GCCTATCTCGACGCAGCCCGCGAGTGGGTGACGGTCACGCCGATGGTGCTGCCTGGCGATTTCGGCGGTGGCGATCTGCGCGTCATGACCAAGCTGCTGCACAAGGCGCTGCGCGAATCGGGCATCGATCCGGGGCTGCTGGCGGGGGCCGAGTTTTCTCGGCAGCCGCTGATCCGGCAGGCGCCCGCGCTGCGCGAAGTGAGGCTCAAGCGCTGGCAGGCGCGCAGCCTGATCCTGTATCACCTGCGGCTGCGCTTTCGGGAGCCGGTGCGCGGGCCGCTCGTGCTCGGGCGCGGGCGGCACTACGGCCTCGGGCTGTTTTGCGCGAACCCCAAGTGAACGGCAGTTCTCTAGTAGGTTCGCGCGCTCTTTAACAAGCTGATTTCAAAGGGAAATGCGGCCGGGTGACGGCGGCCGCGATGGCTCCGCAGCCCCGATACCCGGCGGTTCGCGCAAGTGGCGCGAAAACCGTCGGGGAATCAGGTGGTTGCAAGTGAGGA # Right flank : CTTGCCAACATCTTTGGCCTTTCATTCGCGGTATCCACCCAATTCGCCCTCCGGGGCGACTTCATTCCTCCGGTGAATCCCGCGAAACCCGCGCTGTCAGCCCACTCCCACACCCCCACGCGCCCCCCAGCGCTATCCCGCCAACCACTGTCCGCAGCCCAATACCCCCTCGCCGCCAACATCCGAGGGACGCTGCATGGACCGCCTGCACGACCACCGCCCGCCGCCTGCCGCCGCGCTGCGCCAGTCCGACCCGCCCGCCACCCGCGCCCCGGCCATCGCAGCTTCCGACGCCACCGTCGTGCCCGGCGCCGCCACCGCCGCCGACCCGCTCTGGTACAAGGACGCGGTCATCTACCAGCTCCACGTCAAGTCCTTCTTCGACGCCAACAACGACGGCGTCGGCGACTTCGCGGGGCTGATCGCGCGGCTCGACTACATCGCCTCGCTCGGCGTCACCGCCATCTGGCTGCTGCCCTTCTATCCGTCGCCGCGCCGCG # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAATTCACTCCGAATGGAGTGACTTCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.70,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 50051-48343 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUHU01000003.1 Derxia lacustris strain HL-12 isolate fresh water ctg_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 50050 37 100.0 34 ..................................... TGAATAACGCCCTGCATGCGCGCGAACGACAGAA 49979 37 100.0 36 ..................................... CGCGCCAGACCCGGCCGAGTTCGCCGCGTTTGCCGC 49906 37 100.0 36 ..................................... TCGACGGTGCGCGTGTAGCCGGCCGACTCGTGCGAG 49833 37 100.0 36 ..................................... GACGAGGTGCACGGCCTCGACTGGCTGCAGGACGAC 49760 37 100.0 37 ..................................... GTGCAATCGGGCGCGGGCAACGTGGCCACGTTCGTGG 49686 37 100.0 35 ..................................... TTTTTTTTGCCTTTGCGAAATAGCACCTAAGCGTC 49614 37 100.0 37 ..................................... GCGCTGCTTGACGAAAGGACCGCGCCATGAGAGCCCA 49540 37 100.0 35 ..................................... ATCGCCACACCTCACGGCAGCCCTGCCATTCGACG 49468 37 100.0 32 ..................................... GGTGATGGACACGGTCATCGACGACACGCTCA 49399 37 100.0 40 ..................................... TCATTCGAGAAGCCGAGGATTGTCGCGCCCGTATCGCCGC 49322 37 100.0 35 ..................................... TCCCGCAGCATCACCGCTACGGCGCCTGCCGCTCC 49250 37 100.0 34 ..................................... CCCGGTCTCGCCTGGCCGCGCCAACGCGCACCGC 49179 37 100.0 35 ..................................... CTATCGTCGGCGGGTAGCGGCTTCCTCACCGACTA 49107 37 100.0 36 ..................................... AGCCCGGCGACCGCTCAGGGCAACGGCCTGTCGTCC 49034 37 100.0 37 ..................................... AAGCTCGTTGCCCGCCACTGCATTGAGCGCAGTGCGG 48960 37 100.0 35 ..................................... CAGCGTCACGCGGCTGGAGGCTATGCGCATCCAGT 48888 37 100.0 35 ..................................... CGGCACGTTGCTCAGCAAGGACATGCGTGACGCAG 48816 37 100.0 37 ..................................... GATCCGTCGGTGAATTCGCCGGTCGCGTGGTAGTGGC 48742 37 100.0 35 ..................................... TTCTTGAACGCGCACTGTCGGCAGGCTGTGGCCTC 48670 37 100.0 35 ..................................... TGTACAAAGCCGGTATCAAGCCCGGCCCGCTTCTG 48598 37 100.0 34 ..................................... CGTCGTCAGCACCGACAACGGCAGTCCGCTGTAG 48527 37 100.0 36 ..................................... GTCTACCCCGAAACGCTCGGCTACGCTGACGGCATC 48454 37 100.0 38 ..................................... ACCGACGGGAATGCCGGCACCAACACGCCGCGCACCAT 48379 37 86.5 0 ...............................G.GTGG | ========== ====== ====== ====== ===================================== ======================================== ================== 24 37 99.4 36 GTTTCTCCCGTCAGAAATGACGGGAGTGGATTGAAAC # Left flank : ATGAGGCCGCCATGCTGGTGATTGTCTGCTACGACGTGAATACCGAAACCCGCGAAGGCCGCCGCCGCTTGCGCCGGGTTGCCAAGGTGTGTGAAGGCACCGGGCAGCGGGTGCAGAAATCGGTATTCGAATGCCAGATTGGCGTGATGGAAATGGAAGCGCTGGAAGCCCGCCTGCTGTCCGAGGTGGATCTGGCGACCGATTGCCTGCGCATTTACCGAATGCCCGACACGCGCGGCTGCGAAGTGCGCCAGCACGGCCAGTTTCGCTCGGTGTATTTCAAGGGCCCGCTCGTGATTTGAGCGCGGCTAGAATGCCGTGTGCGCGAACCCCAAGTGACCGGCGATTTGCCGGGAGGTTCGCGCTGACCGCAAGGTCTTGATTACATGGCATTTTGCTTGTGGATAACTCTTTCTCGCACCTCAGCCGACATGCTTCGTGTCCGGGTCCGCGCAAGGCGGGCTTTTTCGGCTGTGGAATCAGGCGCTTGGACGCGAAGA # Right flank : CGGGCTTGGCGTGGCCCGATGAAGTCGGAAATGGCCGCCTATCGAGGCGGCGTCTTGCTGCCGCCCATCCGGCCCGCCTCACCCATCCAGCGCCGCCATCTGCCGCTCCCGCTCGCGCGCAATCACCAGCGTCGTCTCCGCCTCGCCCAGCCCCAGCGTGTCCAGCACCCGCGCGGCAATCTGCAAGCCCGCTTCCAGCGCCTCCGGCACCACGGCGGTCGCACCGGCCCGGCGCAATTCGCGCGCATGTTCGGCATCGTGCGAGCGCGCGTAGATGGGCACATGCGGGCAGGCCGCGCGCATGGCCCGCACCGCATGCAGCGCGGCGGCCGGCTGGTCCATGGTGATGACGATGGCGGTCGCGCGCGCCGCCTCCAGCTTGCGCAGCAGCTCGGGTCGGGCCGCGTTGCCGTAGTACACGGGCAGGCCGGCGGCATGGTCGGCGGCAGCGCGGCGCGCATCGCTTTCCACGGCGGTCCACGGCACGTCGCGCTCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCCCGTCAGAAATGACGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.00,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 60056-59149 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUHU01000003.1 Derxia lacustris strain HL-12 isolate fresh water ctg_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 60055 37 100.0 37 ..................................... ACATTCAATTTCGACGCGAATGGCAATGGCATGACCG 59981 37 100.0 36 ..................................... GAGACGGCGCACATCGTCCTGCGTCATCCACGGTGC 59908 37 100.0 36 ..................................... CTCGACCACCATCCACGCATTGCCGGCGGCCAGCGT 59835 37 100.0 34 ..................................... CGCGCTTCACCAGCGCGACGCTGGGTTTCTGGTC 59764 37 100.0 35 ..................................... AAGCCGAGATCGAGAGGCGCCGGCAGAACCCGACT 59692 37 100.0 35 ..................................... GTCATAGGCCACCAGCCCGCGCGTCTGGTGCGACA 59620 37 100.0 35 ..................................... GTCGCGGGCCGGCTGGTAATGGGCATGGGGCTGAC 59548 37 100.0 37 ..................................... CCGACACGCAGGTCGGCCGCAAGGGCCGCGTCGCGCA 59474 37 100.0 38 ..................................... TGAATTCGATGCGCACGCGGTTGTAGGCGTCGCTCGGC 59399 37 100.0 33 ..................................... TCGCGCGCGCTCAGGTCCACGTCGGCGGCGCCG 59329 37 100.0 36 ..................................... AACACGTCGAGCCAGCGCGCGGTGCTGTGCTACCCC 59256 37 100.0 35 ..................................... AGCGTCGGGATCGGCAGCGCATGCGCTTCCTCGAT 59184 36 81.1 0 .....-....C..C...C.G.A....C.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 98.5 36 GTTTCTCCCGTCGTAATTGACGGGAGTGGATTGAAAC # Left flank : GACGGGAGTGGATTGAAACTTTACTCGGCGCGGCCGGGATGGCGCTTGCCGCAG # Right flank : GAGATCGTGCCGTGTGTCGACGACCTGCTGCACGGTTTCTCCCGCCGCAGCAGGCCGTCCCACCAGTCTGACCAGCAAGGCATCGCCGGCACCGCTGCGCTCGCTTGTTTTCATGTTTGTTCGGTACGCCCGATGGCTGGATCACTGCATCGGCCGGCCGGTGGCGCGCACGCAAATACCGTTGCGTTTAGCCATGCGCCGCCGCTTCTATTGCGCCGCCGCCATGCCGGCATCCAGAAAATGCGCGCCACAATGATCTGGATCAGATTCGTGAGTTATGCCGCAATTCCCAATTTTGGCTCGGATCATTTCGGCCCTATGGTTTGTCTTGAACCTGATTGGTTAGACTTTGCGGTACTCAATGCTCATGGCCTAACCCTTTCAGATCATGCCGTCGCCTTTGCCCGCCAATTTCCGCCCGCTGGCGCATTTGAATGCCGGCGCGAGCAATGCAGAAGCCGGCGGCCATTTGCTTGTCGAGCATTTGCAAGAGGTGGCCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCCCGTCGTAATTGACGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 2789-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUHU01000037.1 Derxia lacustris strain HL-12 isolate fresh water ctg_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2788 37 100.0 37 ..................................... CTGATCGGCGAGCTGGAACGGCTCGACCAGTCGCTGC 2714 37 100.0 35 ..................................... TCCTTGGCCTTGGCCGCAAGTTCCGCCACGCGGCT 2642 37 100.0 35 ..................................... ATGAAGGCATCCCTCGAAGTCGTCCCGCAGCTAGA 2570 37 100.0 36 ..................................... GCGCACTCGCATGCTGGCGATGATGCGATCCGTTTC 2497 37 100.0 35 ..................................... CGCTTTGGAGGTGCAGCATGAGCAACGTCCAAGAC 2425 37 100.0 36 ..................................... AGATTGAGGTGCAGATTGCCGCGACGGCGGTGGCTC 2352 37 100.0 33 ..................................... TCCTCCACGTCGTCGAACAGCTCGCACTGCCTG 2282 37 100.0 36 ..................................... CCGACGTGATCGCGGCGGCCGTCGCGACTGCCATCG 2209 37 100.0 36 ..................................... TTGTTGATGCGGCCGTCCGCCTGATACGTGCCCGAC 2136 37 100.0 35 ..................................... GACATCGCGTCGGGCGGCCATGCATTTTCAGCAAC 2064 37 100.0 35 ..................................... ATGAGGCCTCAGGACTGGATGATGGAAAGGGTGCG 1992 37 100.0 34 ..................................... GTCTTGTCGGTAGCGGTCGCGCCCTGCAAATTGC 1921 37 100.0 33 ..................................... CGCTGGCTCGACGACGAAAAGGAAGGCTCGTTG 1851 37 100.0 35 ..................................... CTTTGCATGCGTTTGCACGACAGGGTTGATGCCCG 1779 37 100.0 35 ..................................... ACGGCGCAGGAGGGCTGGTACGAGGGGACGACTGC 1707 37 100.0 33 ..................................... CTGCCGAAAGCTCGATGCCTACGACAGTGGCCG 1637 37 100.0 34 ..................................... TCCAGCGCGCTTTCGCAATCGGCCAGCTTCGGCC 1566 37 100.0 38 ..................................... TACGCGGGGCTGCTGCACGACGGCCTGTTCCTCGACCA 1491 37 100.0 36 ..................................... GTCTACCCCGAAACGCTCGGCTACGCTGACGGCATC 1418 37 100.0 37 ..................................... CTGGCTCTCCCGTCGCCCTGAGTGCGCCCCGGCCGGG 1344 37 100.0 36 ..................................... CTCGAGGTCGTGGCGAGCCCGACGGCGCGCCAGGGC 1271 37 100.0 35 ..................................... AGCTCGACCACCGCCGCTCCGTCGGCGCTGCGCAG 1199 37 100.0 37 ..................................... GGCGATGACGGCTGCGCGCTGTGATGCGGTCGGCGGC 1125 37 100.0 35 ..................................... GCTGCCGGGCGTTTCCGCTGCCGAGCCAGACCATA 1053 37 100.0 36 ..................................... CTGAGCGTGGAGCCGATGCTGGGGCCGATCAGCATC 980 37 100.0 33 ..................................... ATCCGAAACCGCATGCCGTTTTCTCCGCCCGCT 910 37 100.0 33 ..................................... AACGGCACGGCGCTGGGTGGCGGGTTCTGGGTG 840 37 100.0 36 ..................................... GGCCATCGCGCGCGCATTTACGGCGACAGCACGCCG 767 37 100.0 38 ..................................... AGCACGTCCTTGACCGGCACGAAATCGTCGAGGCCGTA 692 37 100.0 37 ..................................... CTGGTCAACGCGGCCGGCCTGCCGGTGCTGACGGGCG 618 37 100.0 37 ..................................... GGCAACCTCGCGCGCTATCGCGGCATGCCCTACATCC 544 37 100.0 36 ..................................... TACAAGGTCTATCTGGCCACGCACACCGGCGACACG 471 37 100.0 36 ..................................... CCGATGAAGAACGCGATTGCCGCGATTACTGCGACG 398 37 100.0 33 ..................................... TCCGCGACCGTCGCGGCGAGCATTTCGGCATTG 328 37 100.0 35 ..................................... GGCCCCGAGGCGCAGAAGTCGGTGGATGGCATGGC 256 37 100.0 35 ..................................... ACGAACCGCATGACGTTGACTTGCGCCCAAGTACC 184 37 100.0 37 ..................................... GTCCAAAGCCAGGACGACGAACCCGCCGCCGCGCCGG 110 37 100.0 36 ..................................... TTTACTCGGCGCGGCCGGGATGGCGCTTGCCGCAGG 37 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 39 37 100.0 35 GTTTCTCCCGTCGTAATTGACGGGAGTGGATTGAAAC # Left flank : AACACGCTGGGCAGCCTCACGACCTACTGGCTTGGCCGCGTGGGCCGGCGCGCGCCGCATCCGGCCGCGCTTGATCGGCATGTGCGCTGGTTTGAGGCGCGCGGGGCGAAGACGCTGTTCTTTGCCTGGGTGCCGTGGGTCGGCGATCTGTTGGTGATCGTGGCCGGTTGGTTGCGCGTGAATGCCTGGGAAGCGACGGGGTGGATTGCGGCGGGGAAATTGCTGCGGTATTTGGCGATTGCGTTTGGGGTTGGGTGGGTGGTGTGAAATGCCGAGGCAATTTTCATTTTCGATTCGATATTGAATTGGATATATTTGAGCTGCGCGAACCTGAAGTGAACAGCGTTTTGCCGTGAGGTTCGCGCAAGCGCCAAGTCATTGAATTTATTGGATTCTGCTTGTGGATAAGTGTAGTGCGAGGGTGAGGCTTGCGGATTCTGCGGCAGGTTCGCGGAACGCCAGCTTTTTTGTCTGGAAAATCATGTGGTTGGGTTTGAAGA # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCCCGTCGTAATTGACGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 112985-110762 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUHU01000014.1 Derxia lacustris strain HL-12 isolate fresh water ctg_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112984 29 96.6 32 ............G................ GTGCGCCAGTAGTCGCGGTCATCACGCATGAC 112923 29 96.6 32 ............G................ CCCACGACGCCGCGAAGAAGATCAACGACACC 112862 29 96.6 32 ............G................ GCCATCTCGTTGCTGTCGAAATAGAGGTGCAT 112801 29 96.6 32 ............G................ TCCTGCTCGGAAAAATCGATGAAGAAGCTGTT 112740 29 96.6 32 ............G................ CGCCACGACTGGCACATCGCCGAGCCTGGGCG 112679 29 96.6 32 ............G................ TCGCCCTGCGATTCGAGTGCCGCCCGCGCCAG 112618 29 93.1 32 ............G...............C TGGCCGCGAGTGGCGGCACGATGCGCACGGTC 112557 29 100.0 32 ............................. CCAAACATGTCGGTCGCGTCGCTTTCGCGCTG 112496 29 100.0 32 ............................. ACCCCGTTCGAGCAGCCTATGGCCTGCCATTG 112435 29 100.0 32 ............................. AACATGTCGCCCGGGTGCGCCGCTTGCTGGGT 112374 29 100.0 32 ............................. TCGGATCTGGAGTTGCTGAACGTCCAAGTGCC 112313 29 100.0 32 ............................. CCTGCGAGCGTCTTGCTTTCCTTGGGCACGCG 112252 29 100.0 32 ............................. CGCCTGTATCTGCGCCTGACCGACATCGAGCA 112191 29 100.0 32 ............................. CGGGCCTCATCCTCGATCTCGTCGACCTTGCG 112130 29 100.0 32 ............................. CTGCGCTGGCCGGGCTGCAAACGATTGCAGGA 112069 29 100.0 32 ............................. GCCCCGCCGGGCGAGCGCGGCCAGACCCTCAT 112008 29 100.0 32 ............................. TGACGCTCGTCACGCATGCCGGGCGCGGCCGG 111947 29 100.0 32 ............................. TGAACATGAATCGCGCGCTGCCGTTCGTCGCC 111886 29 100.0 32 ............................. CGCGGCTGGTCGATGGTCGACGGCGCATCGCC 111825 29 100.0 32 ............................. GCAGTGAAGCGATCCAAATTGCGATTGAAATA 111764 29 100.0 33 ............................. TAGTCAACGCGCGGCATGAGCCACCCGGCATGA 111702 29 100.0 32 ............................. ACGCTTTACAGCCATTCCCCGGCTGCCGATCC 111641 29 100.0 32 ............................. GCGAACATCACGCGCCCGCCCGGTCGCCGGCA 111580 29 100.0 32 ............................. CGCGCCGACCAGCATCAGCTGCGTGTTCACGC 111519 29 100.0 32 ............................. GGTTCTGAGATGGACGCATTTGCAGGGCTCGA 111458 29 100.0 32 ............................. GCGTGCGCGCGACGCTCACGCCCGGTGCTGCG 111397 29 100.0 32 ............................. CCCGCGCTGCCTGCTGGCGTCCCGGAACGCCT 111336 29 100.0 32 ............................. AAATCGTCGATCTTGGTGCCTGCTTTGGCGCC 111275 29 100.0 32 ............................. CCGCTGCTCGTGAGCTCGGCCGGCGGCTCGAA 111214 29 96.6 32 ................A............ CGGTCAATTCCGGCGCGGGTTTGGTTGCTAGT 111153 29 100.0 33 ............................. CACTGCGCGCTGACCTACATCTCGCAGGCGGCC 111091 29 100.0 32 ............................. AACGCCTTCTGCCGCTTGTTCTCGGACCGGTT 111030 29 100.0 32 ............................. CACGTCTTGCCATTCGGCTTCGGCTTCCGGGC 110969 28 96.6 32 .................-........... TTCGACGAACTCACCGCCAAGATCGAAGACCT 110909 29 100.0 32 ............................. CGCCTTGTCGACTTCCCGAGCGGACTGAGCAT 110848 28 89.7 32 ...C....-...C................ GGACGTGACGGACGGCACCGGGCCGCGCGAGG 110788 27 82.8 0 ..A.........--........C.....A | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.3 32 GCGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGCCAGACGCGGCTGCTCGAACGCATCATTCCCGACATCGAGACGATGCTCGCCGCCGGCGAGATCAGCCCGCCCGCCGCGCCCGACGATGCCGTCGGCCCGGCCATCCCCAATCCCGAAAGCGTCGGCGATGCTGGTCATCGTTCTTGAGAACGCGCCGCCGCGCCTGCGTGGCCGGCTGGCGGTGTGGCTGCTGGAGATCCGCGCCGGCGTCTACGTGGGCAACTACTCGAAGCGCGTGCGCGAGCACATCTGGGCGCAGGTGGAAGAGGGCATCGAGGACGGCAATGCCGTGATCGCCTGGCGCAGCGGCAACGAGGCGGGGTTCGAGTTCATGACGCTGGGGGCGAACCGGCGCGTGGGGGTGGATTTCGATGGGGTGCAGCTGGTGAGTTTTCATCCGGAAGTCGGTGGTTCGGATGGGTGAATTTTCATCGGAATTTTTCGGTGGAAATTTCGGAGGTGGAAAGCGCTTTAAAAATCAGTGAGTTAGGGTTAGT # Right flank : GTGAGCTTCCACAACGCGCCCCCGGCATGCGCGCGTTCCCACGAGCGGCCGATCGCCCGCCCCAAATCGCGCCGACCGAGGTCGGTTAGTGCCAATCCTCCTTGCCGCAAGCTGAACACCCGCTGCCCCTTCCATCCGCGCAAACTTCCACCGGCCTGCCGCCATCTCCCCACCGCTCAGCCGCCGATCCCATGCGCCGCCACCTCCGCCGCTTCCGCCAACGTCTCGACCAAGCCCTGCCCAGCGCACTGCCCGAGGGCTTTCCGCTGCGCTATCTGCTGGCGAGCCTGCTGCTGGTCGCGCTGCTGCCGGCGCTGCTCGGCGAGGTGCCGGCCCAGCCCTGGCGCGATCCGCAGCTCTCGCCCGACGAACGCGCCCGCCTGCTCGAAGCCAAGCTCACGCCCGACGAGCGCATCGCGCTGCTGCACGGCCCGATGGGCACAGCCTTCGCCGGCAAGCCCAAGCCGCCCGGTGCGCTCGGCTCGGCTGGCTACATCCCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 150340-149517 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUHU01000014.1 Derxia lacustris strain HL-12 isolate fresh water ctg_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 150339 29 96.6 32 ............................T CGAACAGATGCGCCTGGCCGAAATGCAAAGCC 150278 29 100.0 32 ............................. CGTTGTCGCGTTGCCCAGAAACGCCTTGTCGC 150217 29 100.0 32 ............................. GATGCGAACGCCATTCAGGGCCTGATGCTCGA 150156 29 100.0 32 ............................. CCTTCGGTTTGCTCGTAATCCTCGCGCGACAG 150095 29 100.0 32 ............................. TGGTCGATGTCGTCGCGCGCCACGCGATGAAG 150034 29 96.6 32 ..........A.................. TCAAATGCGCCTGTCGTTGTATTCCATCGCCG 149973 29 100.0 32 ............................. GCAGCTGCCGTCACGCCCACGGCCCGCGCCAG 149912 29 96.6 32 .C........................... GTGGAACTGCTGCTTGCTGCGCTCATGGCGCA 149851 29 96.6 33 .C........................... GACATGGTGATCTCCGGTAGGAGCCCGGCGAGC 149789 29 100.0 32 ............................. GTGGCGGCTACGCGGCGGCGACGGTTGCTGTG 149728 29 100.0 32 ............................. GCGGCCGCGAGTCGCGGGCCGGCGTCCCGGTC 149667 29 100.0 32 ............................. ACGCCCATCGCGTACATGGTCGGTGCGACTGC 149606 29 96.6 32 .C........................... ACACATGGCGCCCAGCACGCGCAGCAGCAGCA 149545 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CTATCTGGCGCGGCGCGGCCGGCCGCAGACGCTGGCCGAGTTGCAGCAGCACGACTGCCTGCTGTTCCGCGACCGCGGCCATTCCTTTGGCGTGTGGCGGCTGCATGGCGAGGCCGGGCCGGTCGAGCCGGTGAAGGTGACCGGCCCGCTCGGCTCGAACCACAGCGACATCGTGCAGAACTGGCTGCACGACGGGCAGGGCATCGCGATGCTGTCGGTCTGGGACGTGGCCGATGCGCTGGCCGACGGCACCGTGGTGCGCGTGCTGCCGCAGTTCTGGCAGCCGGCCGATGTGTGGGCCGTGACCGCGACGCGCGCCTCGGCGTCGATCAGCATCCGGCTCGGGCTGGAGTTCTTGTGCGAGCAGTTGCGGGCGGGGCCGTTTGCGTTGCGGACGGAGGTCGATTCGTGCAGCCAATCTCGATGAAGATTCATGGAGAATCGGCGGTGGTTTTTTCGGCAGGGAAAAGCGCTTTAAAAATCAAAGAGTTGTTCTTGGT # Right flank : CCGCGCCTGGACGCACTGGATGCTCACGTTCATTGCATCCATCACAGCGTTTCTCCCGCGGGCAGCGTGCGACTCGGCTTGATGGCCACCCCTGGCAACGGCTGTGCTGCAGCGAGTTTGAATACCCCCTGCGCCGCCCGCTCGCGGCCACCGGGCTTGCCCTCTCATTCCGGCAAGCCCGCGCATGGATCGGCAATCGGAGACAGCTTTCAGGAACCCATGCTTGTCATCGTCCAGCCAAGACAGGGCCGGCACCGCATCCGCCAACCAAGGGCCGACTGATCAGTTGCGGCACCAATCCGAACTGGAGATCAAGCAAGGTGCTGTTGCCGTCGAATTGGGGCATCCCGGCCAAGGTATTGCACGCATAGCGATAAGCGAGATCGCCGCCGAGTGCCAGGACATCACTGCCACTCCCACTGAATTGGGAAGCCAACAGCAAATTCATCAGTCCCGTCCACTGCCTGCCCCCTGGCGGCTGGCAATCGTTGCCGGTCACT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : GCGTTCCCCACGGGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22352-23174 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUHU01000007.1 Derxia lacustris strain HL-12 isolate fresh water ctg_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22352 29 96.6 32 ............................T CGAACAGATGCGCCTGGCCGAAATGCAAAGCC 22413 29 100.0 32 ............................. CGTTGTCGCGTTGCCCAGAAACGCCTTGTCGC 22474 29 100.0 32 ............................. GATGCGAACGCCATTCAGGGCCTGATGCTCGA 22535 29 100.0 32 ............................. CCTTCGGTTTGCTCGTAATCCTCGCGCGACAG 22596 29 100.0 32 ............................. TGGTCGATGTCGTCGCGCGCCACGCGATGAAG 22657 29 96.6 32 ..........A.................. TCAAATGCGCCTGTCGTTGTATTCCATCGCCG 22718 29 100.0 32 ............................. GCAGCTGCCGTCACGCCCACGGCCCGCGCCAG 22779 29 96.6 32 .C........................... GTGGAACTGCTGCTTGCTGCGCTCATGGCGCA 22840 29 96.6 33 .C........................... GACATGGTGATCTCCGGTAGGAGCCCGGCGAGC 22902 29 100.0 32 ............................. GTGGCGGCTACGCGGCGGCGACGGTTGCTGTG 22963 29 100.0 32 ............................. GCGGCCGCGAGTCGCGGGCCGGCGTCCCGGTC 23024 29 100.0 32 ............................. ACGCCCATCGCGTACATGGTCGGTGCGACTGC 23085 29 96.6 32 .C........................... ACACATGGCGCCCAGCACGCGCAGCAGCAGCA 23146 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CTATCTGGCGCGGCGCGGCCGGCCGCAGACGCTGGCCGAGTTGCAGCAGCACGACTGCCTGCTGTTCCGCGACCGCGGCCATTCCTTTGGCGTGTGGCGGCTGCATGGCGAGGCCGGGCCGGTCGAGCCGGTGAAGGTGACCGGCCCGCTCGGCTCGAACCACAGCGACATCGTGCAGAACTGGCTGCACGACGGGCAGGGCATCGCGATGCTGTCGGTCTGGGACGTGGCCGATGCGCTGGCCGACGGCACCGTGGTGCGCGTGCTGCCGCAGTTCTGGCAGCCGGCCGATGTGTGGGCCGTGACCGCGACGCGCGCCTCGGCGTCGATCAGCATCCGGCTCGGGCTGGAGTTCTTGTGCGAGCAGTTGCGGGCGGGGCCGTTTGCGTTGCGGACGGAGGTCGATTCGTGCAGCCAATCTCGATGAAGATTCATGGAGAATCGGCGGTGGTTTTTTCGGCAGGGAAAAGCGCTTTAAAAATCAAAGAGTTGTTCTTGGT # Right flank : GCCGCGCCTGGACGCACTGGATGCTCACGTTCATTGCATCCATCACAGCGTTTCTCCCGCGGGCAGCGTGCGACTCGGCTTGATGGCCACCCCTGGCAACGGCTGTGCTGCAGCGAGTTTGAATACCCCCTGCGCCGCCCGCTCGCGGCCACCGGGCTTGCCCTCTCATTCCGGCAAGCCCGCGCATGGATCGGCAATCGGAGACAGCTTTCAGGAACCCATGCTTGTCATCGTCCAGCCAAGACAGGGCCGGCACCGCATCCGCCAACCAAGGGCCGACTGATCAGTTGCGGCACCAATCCGAACTGGAGATCAAGCAAGGTGCTGTTGCCGTCGAATTGGGGCATCCCGGCCAAGGTATTGCACGCATAGCGATAAGCGAGATCGCCGCCGAGTGCCAGGACATCACTGCCACTCCCACTGAATTGGGAAGCCAACAGCAAATTCATCAGTCCCGTCCACTGCCTGCCCCCTGGCGGCTGGCAATCGTTGCCGGTCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : GCGTTCCCCACGGGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59707-61929 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUHU01000007.1 Derxia lacustris strain HL-12 isolate fresh water ctg_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 59707 29 96.6 32 ............G................ GTGCGCCAGTAGTCGCGGTCATCACGCATGAC 59768 29 96.6 32 ............G................ CCCACGACGCCGCGAAGAAGATCAACGACACC 59829 29 96.6 32 ............G................ GCCATCTCGTTGCTGTCGAAATAGAGGTGCAT 59890 29 96.6 32 ............G................ TCCTGCTCGGAAAAATCGATGAAGAAGCTGTT 59951 29 96.6 32 ............G................ CGCCACGACTGGCACATCGCCGAGCCTGGGCG 60012 29 96.6 32 ............G................ TCGCCCTGCGATTCGAGTGCCGCCCGCGCCAG 60073 29 93.1 32 ............G...............C TGGCCGCGAGTGGCGGCACGATGCGCACGGTC 60134 29 100.0 32 ............................. CCAAACATGTCGGTCGCGTCGCTTTCGCGCTG 60195 29 100.0 32 ............................. ACCCCGTTCGAGCAGCCTATGGCCTGCCATTG 60256 29 100.0 32 ............................. AACATGTCGCCCGGGTGCGCCGCTTGCTGGGT 60317 29 100.0 32 ............................. TCGGATCTGGAGTTGCTGAACGTCCAAGTGCC 60378 29 100.0 32 ............................. CCTGCGAGCGTCTTGCTTTCCTTGGGCACGCG 60439 29 100.0 32 ............................. CGCCTGTATCTGCGCCTGACCGACATCGAGCA 60500 29 100.0 32 ............................. CGGGCCTCATCCTCGATCTCGTCGACCTTGCG 60561 29 100.0 32 ............................. CTGCGCTGGCCGGGCTGCAAACGATTGCAGGA 60622 29 100.0 32 ............................. GCCCCGCCGGGCGAGCGCGGCCAGACCCTCAT 60683 29 100.0 32 ............................. TGACGCTCGTCACGCATGCCGGGCGCGGCCGG 60744 29 100.0 32 ............................. TGAACATGAATCGCGCGCTGCCGTTCGTCGCC 60805 29 100.0 32 ............................. CGCGGCTGGTCGATGGTCGACGGCGCATCGCC 60866 29 100.0 32 ............................. GCAGTGAAGCGATCCAAATTGCGATTGAAATA 60927 29 100.0 33 ............................. TAGTCAACGCGCGGCATGAGCCACCCGGCATGA 60989 29 100.0 32 ............................. ACGCTTTACAGCCATTCCCCGGCTGCCGATCC 61050 29 100.0 32 ............................. GCGAACATCACGCGCCCGCCCGGTCGCCGGCA 61111 29 100.0 32 ............................. CGCGCCGACCAGCATCAGCTGCGTGTTCACGC 61172 29 100.0 32 ............................. GGTTCTGAGATGGACGCATTTGCAGGGCTCGA 61233 29 100.0 32 ............................. GCGTGCGCGCGACGCTCACGCCCGGTGCTGCG 61294 29 100.0 32 ............................. CCCGCGCTGCCTGCTGGCGTCCCGGAACGCCT 61355 29 100.0 32 ............................. AAATCGTCGATCTTGGTGCCTGCTTTGGCGCC 61416 29 100.0 32 ............................. CCGCTGCTCGTGAGCTCGGCCGGCGGCTCGAA 61477 29 96.6 32 ................A............ CGGTCAATTCCGGCGCGGGTTTGGTTGCTAGT 61538 29 100.0 33 ............................. CACTGCGCGCTGACCTACATCTCGCAGGCGGCC 61600 29 100.0 32 ............................. AACGCCTTCTGCCGCTTGTTCTCGGACCGGTT 61661 29 100.0 32 ............................. CACGTCTTGCCATTCGGCTTCGGCTTCCGGGC 61722 28 96.6 32 .................-........... TTCGACGAACTCACCGCCAAGATCGAAGACCT 61782 29 100.0 32 ............................. CGCCTTGTCGACTTCCCGAGCGGACTGAGCAT 61843 28 89.7 32 ...C.-......C................ GGACGTGACGGACGGCACCGGGCCGCGCGAGG 61903 27 82.8 0 ..A........--.........C.....A | ========== ====== ====== ====== ============================= ================================= ================== 37 29 98.3 32 GCGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGCCAGACGCGGCTGCTCGAACGCATCATTCCCGACATCGAGACGATGCTCGCCGCCGGCGAGATCAGCCCGCCCGCCGCGCCCGACGATGCCGTCGGCCCGGCCATCCCCAATCCCGAAAGCGTCGGCGATGCTGGTCATCGTTCTTGAGAACGCGCCGCCGCGCCTGCGTGGCCGGCTGGCGGTGTGGCTGCTGGAGATCCGCGCCGGCGTCTACGTGGGCAACTACTCGAAGCGCGTGCGCGAGCACATCTGGGCGCAGGTGGAAGAGGGCATCGAGGACGGCAATGCCGTGATCGCCTGGCGCAGCGGCAACGAGGCGGGGTTCGAGTTCATGACGCTGGGGGCGAACCGGCGCGTGGGGGTGGATTTCGATGGGGTGCAGCTGGTGAGTTTTCATCCGGAAGTCGGTGGTTCGGATGGGTGAATTTTCATCGGAATTTTTCGGTGGAAATTTCGGAGGTGGAAAGCGCTTTAAAAATCAGTGAGTTAGGGTTAGT # Right flank : AGTGAGCTTCCACAACGCGCCCCCGGCATGCGCGCGTTCCCACGAGCGGCCGATCGCCCGCCCCAAATCGCGCCGACCGAGGTCGGTTAGTGCCAATCCTCCTTGCCGCAAGCTGAACACCCGCTGCCCCTTCCATCCGCGCAAACTTCCACCGGCCTGCCGCCATCTCCCCACCGCTCAGCCGCCGATCCCATGCGCCGCCACCTCCGCCGCTTCCGCCAACGTCTCGACCAAGCCCTGCCCAGCGCACTGCCCGAGGGCTTTCCGCTGCGCTATCTGCTGGCGAGCCTGCTGCTGGTCGCGCTGCTGCCGGCGCTGCTCGGCGAGGTGCCGGCCCAGCCCTGGCGCGATCCGCAGCTCTCGCCCGACGAACGCGCCCGCCTGCTCGAAGCCAAGCTCACGCCCGACGAGCGCATCGCGCTGCTGCACGGCCCGATGGGCACAGCCTTCGCCGGCAAGCCCAAGCCGCCCGGTGCGCTCGGCTCGGCTGGCTACATCCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //