Array 1 131441-130680 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJMH01000010.1 Escherichia coli strain IMT38402 NODE_10_length_148112_cov_68.6032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131440 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 131379 29 100.0 32 ............................. TGGCTCTGTTTTTGCGACAAGCGCAAGGTATC 131318 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 131257 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 131196 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 131135 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 131074 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 131013 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 130952 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 130891 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 130830 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 130769 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 130708 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76291-77356 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJMH01000023.1 Escherichia coli strain IMT38402 NODE_23_length_86800_cov_68.1541, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76291 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 76352 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 76413 29 100.0 32 ............................. TTTTCGGGGCCATAAATGGCGCTCATTTATGT 76474 29 100.0 32 ............................. GATACTTTATTAGCGAAAGTAATCCTAGCTCT 76535 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 76596 29 100.0 32 ............................. CGGCACCAGGGCTGAAAGGCGGGGCCGCTAAA 76657 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 76718 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 76779 29 96.6 32 .....T....................... TTTGTTTTGATGATTTATCAGTATATGAATTG 76840 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 76901 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 76962 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 77023 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 77084 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 77145 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 77206 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 77267 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 77328 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //