Array 1 505601-508213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYVE01000001.1 Listeria monocytogenes strain LM06-01598, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 505601 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 505667 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 505733 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 505799 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 505865 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 505931 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 505997 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 506063 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 506130 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 506196 35 97.2 30 ....................-............... AGAGGCAACGAGACTACAGACGCACTTAGA 506261 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 506327 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 506393 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 506459 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 506525 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 506591 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 506657 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 506723 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 506789 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 506855 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 506921 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 506987 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 507053 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 507119 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 507185 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 507251 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 507317 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 507383 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 507449 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 507515 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 507581 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 507647 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 507713 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 507779 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 507845 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 507911 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 507977 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 508043 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 508109 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 508175 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [508200,508206,508209] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //