Array 1 286540-285931 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZZ01000008.1 Actinokineospora iranica strain IBRC-M 10403, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 286539 29 96.6 32 ............................G CAGTGGTACCACCTGTTGGCCGAGTTCGCGCC 286478 29 100.0 32 ............................. ATGGCGCCGAGGCGGCCCATGTTCTGTGCGAA 286417 29 100.0 33 ............................. TGGTCCGACGACACGCCACCTGTCGAGCGGCCA 286355 29 100.0 32 ............................. GACGGCAGGGTGATGCTCGACCAGGTCGGGAC 286294 29 100.0 61 ............................. NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCGG 286204 29 96.6 32 ...................A......... CGCCAGGACCTCCAGATCGTCACGGTGCTCCA 286143 29 96.6 32 ............................G TGATCGAGGCCCAAGAGGCCGGGCGACGGTCC 286082 29 100.0 32 ............................. TCGGCCTCGGCGAGGCGGACCTCGTAGCTCAG 286021 29 96.6 33 ............................G AGCGCGCAGCGAGGCGACCAACCGCGTGGCCGG 285959 29 93.1 0 ...........................AG | ========== ====== ====== ====== ============================= ============================================================= ================== 10 29 98.0 36 GTCTTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : GGCCAGTCGAAGTACGTCTACTGCCCGAGCGGAGCCCTGCTCGACTTCGTCGTCGACATCCGCGTCGGCTCACCGACCTTCGGCCAGTGGGACGCCGTCCGCCTCGACCCGGTCGACTTCCGCGCGGTTTACGTGCCCGAAGGCGTCGCGCACGGCTTCGTGGCGCTGGAGGATGACACGGTCATCTCGTACCTGTGCTCCACCGGCTACAACCCGTCGGCCGAGCACGGCATCAACCCGCTGGACCCCGACCTCGCCCTGCCGTGGGCCGAGGACATCGAACCCCTGCTGTCCGAAAAGGACGCCGCCGCCCCCACCCTCGCCGAGGCCAAGGCAGCGGGCTTGCTCCCCACCTACGCCGCCTGCCAGGCCCGCTACGAGCGACTCCGCGCGACCTGACACCGACCTCATTCCCTTCGACCGCTCGACCCCAGCTCCGCACTCGACCAAAAGTGAATTCAAAACACCGTTCTGATTCGCAAACCCCCAGGTCAACAAGT # Right flank : TTCGCGGCGGGCCACGGCGAGGCGGCTCGGTGGTCTTCCCGCCCCTAGAGGCGGCGTGGCCGTGGCCACAGCCGCCACCGGATGACCGCGTGCACCCGCGCAGGCCCCAGCGTCCGCGAGTCGGTCGACTCGCCTGCGTTGTCGCCCTCCACGTGCCACCCCTCACCGTCCCGGTGGACCGCGCGTTTGACCGAGAGCTGTCCCGGCCGCGCGTCCCAGGTGACCAGCACGATCGCGCCCGCCGCCACCTGCCGTCGGGTGGCCACGACCGTGTCGCCGTCGGATAGCGCGGGACGCATGGATGCCCCGCGCACCCGCACCCGGCGCGCGGGCGCGCGGCCCAAGGGGTTCGCCGCCGTCAAAGGATCACCTCCACCTGCCCGTCCAGGATGCCCGGAGTAGGGTCGATTCGTCGGAGCATCCCCGTTTTGCCCATGGAGGAAAAATGCGACTCTGGTCGCGCTTTCTCGCCCCTCGACTGGAGGCCACCGCGCACTGCG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 162857-163355 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZZ01000009.1 Actinokineospora iranica strain IBRC-M 10403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 162857 29 100.0 33 ............................. CCGCGCGGGGTGCACTCAATTACCCGTAATAGA 162919 29 96.6 31 ............................G CAGGTAGAGCTGGCGTGAGAAACGGGACCTT 162979 29 96.6 32 ............................A GCCGCTGGCCGCTCCGACGGCGGGATCGCGAT 163040 28 93.1 32 .....T...............-....... AGCAGCCCGGCTCGCTCGTCGGCCGGGAGGTC 163100 28 82.8 30 ...........-G.T.........T..T. CGTCGGCCGATGCAGGCTGCATCACCTGTG 163158 28 89.7 23 ...........G....-....G....... CCGAGGTCGCCTAGGCCGGGAGT Deletion [163209] 163209 27 86.2 90 ..........--.G..............G TTTCCACCAAGGTGAGTGCGCTCTTGCGCTCGCCCGTCCCGCGCGCGCGGATGTTCCGCACTCGACGCGCACCGCTTCGCCATGTGGCAC 163326 29 75.9 0 .TT........G..G......T..T...G | G [163340] ========== ====== ====== ====== ============================= ========================================================================================== ================== 8 29 90.1 39 GCCCTCCCCGCACACGCGGGGATGCTCCC # Left flank : TTTCGCTCCCTGTCCTCCACAGGGACGTTAGCGATCCCCAGTGCGGACGGTCATCCGGTTTTCCGGCACCCGGGGCGGCATCATGGTCCCCATGACACGACCGGACCCCGTGCGCTTCCTCCGCACGGAACCCAGCATGGCCTTCCCCGAGGGCAGGCTCCTCGCCCTCCGCGACGGCCAACTGCACCTGCTGGCCCCGGACGGCTGGACCCGCCTCGGCCGCTCCCGCCCCGACACCGCCACCTGGCTGACCCGGGAAGCCGCAGAAGACTGGTGCGAACGCGAGGGCTGGGACCTGAACCTCCTGGACGCCGTCCCCGCCACGATTCTCTAGCGCTCGCAGCCTTCGTGAAAGCCAGTCGACGGGAAGCGGGCGCGACCGCTGTGCCTGAGCACTCTGCTCCAGACGCGAGCGGCGGCTGACCGGATCACCAGGCCCAAGCTTGACCAGAGCGAATGCAAAACACTGTTTCAACTCGCGAACCCGCAGGTCAACCAGC # Right flank : GGTTGTGGCCATCGCTCGGCTGTCCTCGTGTTGTCTGCCCTCTCCCATGAAGGTGCCGGCTGTGCGGACGAGGCAATTTGCTGTTCCGCCTGCTCATCACGAGCGCTTGGTGATCGGCTCGGCAGCCACGACGCGTATCCCGCTCCCTGGGGGAGCGGGATACGCGGGGGAGTGAGGTGGGTGCCGGGCGGGGCCTGGCGCTGGTCAGCCTCGGTTGGAGCGGGTGCCCAGGAGGACGTCTTCCCAGGACGGGACGATCGGGCGGGCCTTTTTCGCCTTGCCGCGCCTGGGGGGTTCCACCTTGCGGGCGGGCTCCTCGATCAGAGCGTCCTGGTGGTCCTCGCCGCGCGGGCGGGGGGTGTCTTCGGGGTGGTCAGATGCCAGGATGGCGGGCTCCTCGGGGGCGGTGGCGGGCTCCGGCTCGGGGATGAGCTCGAAGTCCTCGACGAAGTCCTGTTCCTCCGTCCTCGGCTCCGGGTCCCGGCGTGCTGGTTCCACCA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:-0.78, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCACACGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 167685-167835 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZZ01000009.1 Actinokineospora iranica strain IBRC-M 10403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 167685 29 96.6 32 ............................G TGGCCGTCCGGGCGGGTCCAGAACGTGACCTG 167746 29 100.0 32 ............................. CTGCGCGCCTACATCGACCGGTTCGACAAGCT 167807 29 86.2 0 ............T...........C.TT. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTCTTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : ACCGCATCACCAGGACGGCCACGAACGTCTTGGTGATCGACCCGATCCGATACTGGGTGTCGGTCGTCGGCACGGCCCCGTCGACCTTCCCCCGCGCACCGGTCCAGGCAAGCCGATCTCCCCGGACAACCCCCGCAACCAACGACGGCGCCCGGCTCCCGGCCTGCTCGGCCGCGATCCGGCGGAGCAACGCGAACTCAGTGGTCTGCAACATGCTTCCGATTGTCGGCCATCGCCCGACGGAACCTGCCTGGAAGGGCCCGAGTTATCCACAATCGCCGAAGTTGTCCACAGGTTTCGCGCGGGCCTTCCGTCTGGCCCCAGAGCCGATAGACTGGAGCGGGGCGGCCCCCCGGGGAGGGTGGGGTTTGCCGTCGCGCGTGGGGGATCGGCGGATCTCACTGCCGGGAGGCATTGGTCGAGTGCTCCGGAAGCTCGCAGACTGACTGAAAGTGAGTGCAAAACGCTGTTCTGGTTCGTGAACCCGCAGGTCAACTAGT # Right flank : CAGGGCGCGGTGCGGGCTGCGAGTCCAGGGTTCGGAAAGCGGCAAGCCCCGCATATGAGCGGAGCGCTCGGTGCGGGGCTTGCCGTCGAACTGAGGGGTCAGGCGCCGGAGATGGCGTCCCAGCCGTCGACTTCCTCTGGGGTTCGGGGGCTGGGGCCCACGTACTTCGCCGCGGGGCGGACCAGGCGGCCGGTGCGCTTCTGTTCCATGATGTGCGCGCACCAGCCCGCTGTGCGGGCGCAGGTGAACATGGCGGGCATCATGTGCGGGGGCACCTGGGCGAAGTCCAGGATGACCGCCGCCCAGAACTCGACGTTGGTTTCGATGGCTCGGTCGGGGCGGCGTTCGCGGAGTTCGGCTAGGGCTGCCTGTTCCAGGGCGGCGGCCACCTCGTAGCGTTCGGCGCCGAGTTCCTGGCAGGTGCGGCGCAGGACGCGGGCGCGGGGGTCTTCGGCGCGGTAGACGCGGTGGCCGAAGCCCATGAGGCGTTCCTTGCGGTC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97813-97480 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZZ01000003.1 Actinokineospora iranica strain IBRC-M 10403, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97812 29 96.6 32 ............................G ATCCACGGTAGCTGACGGGTCAGCGATCATGC 97751 29 100.0 32 ............................. GGGTCGACTCGGCCGTATTCCTGCCTCTACAC 97690 29 100.0 32 ............................. TGTGTCTTGCAGGTTGGAGCCCGCTTCCGTGG 97629 29 96.6 32 ............................T CAGTTCTGGCGGTGACCTTCGGGTGTCCGGTC 97568 28 93.1 32 ...............-............A CTCCGCTTGTGGTCGAAAGATTGAGCGATTGG 97508 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.2 32 GTCTTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : GCGGATCACGCACGCCGCACAGCGGGTCGCGGCGCTGCGCCAGCTTCGGGCCCGGGTGGCCGACCAGTTGCACGCCGCGCGGGACCTGATCGCGGACGCGCATGTGCAGCTTGCCGACGCCGCGCCGGTGCTGGAGCCACTGCCGGAAGAGCGGACGGTGAAGACGATCGACGGAGCGGTGGCTGACGAGTCGCCGACGCGGACGATCACTCCGATGTCCGGGCCGCCTCGGGAGCACTGGGAGCCTGCCGAGATCGAGCCGGAGCGGGCACCTGGTGCCCAGCGGCTGACGAATCCTGGCGGGGCGCCTGCTCGGCCCTGAGCTGCCGTGGGTTTGCTGGCGGGCATAGGTTCGGCCTGGCAGGCGAGGGAGTGTGCCCGGCAGGTGGAGCCGGGTGGGTGGGACGCCGGGGTGTCGACCGATCGGGTTCACAAGCCCTAAGCTCAACCGAAGTGAATGAAAAACACTGTTTCGATTGGTAACCCGCAGGTCGTCAAGT # Right flank : CTGGAGGCAGCGGCCACCGCGCGCTGCACGGTCAGGTCTTCCCTGCCCGCGAAAGTTTGGACTCGGGCTGTCGCACCACCGAGGCGCACAAGTCAGCGATCGGCACCGGTTGTCCTCTGCTGGCGAGAAGGGCGGACAGCGGAGCACCCATCCCTGCCCGCCCAATCAGAGCGCTATGACTGCCCGAACAGGCCCACCGCAAAGCCCGCCCGCCCTGGGGGGACCGTCCCTGATCCATCCTATCGGCGCAGGTCAGCGCGAGGAAGAGGGAGCGGCGCGGCTGTGGATAACTCGCCCACGAACCGTGGGAAGGGGTCAGGGACCGTCTGTGCCGATGTCTTCGTGCCAGAGGTCGGGGTGGGTGGTGATGAAGTCGGTCATCATGCGGATGCACTCGTCGTCGTTGGCGATGGTGATCGTGACGCCGTTGTCGGCTAGCCAGTCGTGGCCGCCGGTGAAGGTTTGGGATTCGCCGATCAGGACGGCTGAGATGCCGAACT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 251849-251452 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZZ01000003.1 Actinokineospora iranica strain IBRC-M 10403, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 251848 29 100.0 32 ............................. TCGTCGACACCCAGCCACACCGCGTCCCAGTC 251787 29 96.6 32 ............................G GACCCGACCGTTTTCGTGGTCGGGGGCACAAT 251726 29 96.6 32 ............................G CCCGCGGGTGTGGGTCGGTGGTGGGCGTGGTC 251665 29 100.0 32 ............................. GAGGGTCGGCGACTCATCGCTACCGCGTTGGA 251604 29 100.0 32 ............................. CATCCCCCCAGGACCCGCCCCCCGCGGCCCCC 251543 29 100.0 32 ............................. CCGCGAGGTGAGTCGTCGGGATCGGTGGCGAC T [251538] 251481 29 96.6 0 ............................A | G [251459] ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTCTTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : ACCGCGGACCAACTGCCGCACGCGGTCCGCAGCACCGGCATCGACCCCCTGGTGCGGGTCTGCACGGAACCGGACCTGACCCCGGGCGCGTTGACGGCGGCGACCGAGTTGTTGAGGCAGGTGGACGGCACGGTCGGCATCATCACCGCGACAAGCCGAGTCGGCGAGATGCGGAGCGCGGTCCTCGGCCTGTCCGAAGACCGCCTGCGGGTCGTGGACGGCTTGGAGTCCAAGGGCCTGGAGTACGACGCGGTCGTCCTGGTCGAACCCGGCGAACTGATCCGCGAGTCGACAACTGGACCGCGGACTCTGTACGTCGCCCTGACCCGCGCGACCCAGCGACTGACAGTCCTGACCACCGATCCCAAGTGGCCCGACGCTCGGTAGTCCCTACGCTGGTAGGACTCGGTGCGTGGATGGTCAAGCACCCGGGAGTGCCCGCCATCAAAGAAGTGAATTCAAAACGCCGTTTCCGCCGACAAACGCGCAGGTCAACAAGT # Right flank : GTAGCCGCGATTGCCCAAGCTGTCGGATTTGGTCGCCCTCGCGCGCGACGGCAAACCCCACCCTCCCCGGGGGGCCGCCCCGCTCCAGTCTATCGGCGATGAAGGCCAAGAGAAGGGGGCCGCGAAAGCTGTGGATGACTCGGGGCTATGTGGATGGGCGGCTGCGGAAAGCCGGCCGAAGCGTGTAGTGCGGGTCAGGAAGGTGGGAAGGCCGCGGCTTTGGCGGCCCAGTGGCCCAGTTGGGCGCGGCGGCGGAGGCCGAGTTTGGGCAGCAGCCTGCGGACGTGGGTCTCCACCGTGCGGATGCCGATGTTCAGCTTCTCGGCGATCTCGCGGTTGCTCAGGCCCTCGGCCGCGAGTTCGGCGACCTCGCGTTCGCGGGCGGTGAGGGGGTGCCAGGGGTCGGGGGTGGGGTCGGGGAGGTCCATGCCCAAGGCCAGGGCGTAGCCGTCGGAAACCGACAGGGCCGCGCCTTTCTCGAAGGCCGCTCGGTAGGCCTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 263600-262835 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZZ01000003.1 Actinokineospora iranica strain IBRC-M 10403, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 263599 29 100.0 33 ............................. CCCAGCCTCGGCACCGGTGCCTACGCCCTGGAC 263537 29 96.6 32 ............................A AGGCAGCGGAAGGCGTATCGGAAGGAGGTGTA 263476 29 100.0 32 ............................. ACGGCGGGCCGGTGGTCCATCGCGTGGACGAC 263415 29 100.0 33 ............................. GGCGGCAGCCCCTCAGCTGGGTTCTCCCGACCA 263353 29 100.0 32 ............................. CCGGCGACCGGCTGGCGGGCCTTGCCCAGCTC 263292 29 100.0 32 ............................. CGGACCCGATCCGCCTCGTAGCGGCCCTGCCC 263231 29 100.0 32 ............................. CCATGCGGACATCTGGATCTCGTGCACGAGCT 263170 29 96.6 33 ..........................T.. GGCGGATCTGGAGGCCGCCATCGCACGGCTGGA 263108 29 93.1 33 ......T.....................G TGCTGGTACTCCTTGGCTTTCCCCTCGGAGTGC 263046 29 100.0 32 ............................. CTGGCCGCCGCCGTACGCGAGTGGGCCACCGC 262985 29 93.1 32 ............T...............G TCGCGGCATGCACGTTCTGTGACCGTAATTCC 262924 29 96.6 32 ............................G GTCTGCGGGTCCGTCCATCCGATTCCCCGGCC 262863 29 93.1 0 ..............C.............G | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.6 32 GTCTTCCCCGCGCATGCGGGGCTGTTCCC # Left flank : CGGAGGCATTCGAAGACCCGGACGTGGTCATGCTCTGGGACTACAACGGGCGCAACGTGGCGGGCGGAACCGCATACGGCGAGGACGACGAATGACTGTCATCGTCGTCGCCGCGTGCCCGGTCGGCCTCCGAGGCCACCTCACCCGCTGGCTGCTGGAGATATCACCGGGGGTGTTCGTCGGCAAGGTCAGCGCCCGGGTACGCGGCTTGATGTGGCAGCGCGTGACCGAGATGGCCATGACTGGACGAGCGATCATGGTCTACGGAGCGGACAACGAACAGGGTTTGGCCTTCGCCGTCCACTCCCACTAGTGGGTGCCGGTCGACTTCGAGGGCGTCAACCTCATGCTCCGCCCCGCTCAACGGTCCGACAACGAGTCACCACGGAAGAACGGGTGGAGCAACGCCAGCAAACGAAGACGCTTCGGCAACCGCTGACTTGACAACGAAAGTGAATGCAAAACACCGTTTCGGTTCACAAACCCGCAGGTCAACAAGT # Right flank : AGACGGTCGCCGAGCTTGAGGTTCTGACGCAGCGAAGCGGGAGCGGGCCCCCGATGCCCGCTCCCGCTTCTCTCCCGCCCCCGGCCTACTGGGTGGTCGTCGTCACCGGTGGAGTCGTCGTCACCGGTGGGGTGGTGGTCGCAGGCGGGGCCGTTGTCGTGGTCGGCGCCGGTCCCGTGGGGGTCGTGGTGGTGGGTGCTGTCGTGGTCACGCTGCCCGAGATGGGGGGCAGGGGCATGAACGGCAGGTCAGCGCGCTCCCTGCACACGCCCGCCTGGTAGTCGACCCTGGGCAGCGGGAACCGGTTCCGGTGTTCGGTGCTCTCGCCGTAGTGGGTGTCGCAACTGGGGCGGTAGACGTTGAGGGGCTTGCCCTCCTCGTCGTAGAGGTAGAACTCCGGGATCGCCTTGCCCTCGGCGTCCACCGCGTAGACGTTGGCGAGGTGGGAACCGTCGTAGGTCAGGCCCGATTGGCTGTAGCCGGTCGGGTAGTACGCGTTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCATGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 187524-187249 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZZ01000002.1 Actinokineospora iranica strain IBRC-M 10403, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 187523 29 96.6 32 ............................C GCCTGCCGCCCTTGCCGCCGGCCGCGCCGGCC 187462 29 100.0 32 ............................. CGTTGCTGTTGCTGGCCGACCGTGCGAAAGCT 187401 29 100.0 32 ............................. GACGCGTGCTGCACCCGGTGCAACTCGCCGTC 187340 29 96.6 33 ............................C GCGCCCTGATCGAACTGGCCGAGCGGCGCGACC 187278 29 82.8 0 ..........G..........T..G.GG. | C [187253] ========== ====== ====== ====== ============================= ================================= ================== 5 29 95.2 32 GTCTTCCCCGCGCACGCGGGGCTGTTCCG # Left flank : GGCCCGGTCCGCGCCGTGCACGTGCTCACCGGGGTCGGCCAGCTCACCCTCAACGCCTACGCCGCCCCCCGCTCCGGCGGCCTGTGGCGCGAAGTGTGCGGGGAACTCGCCGAGCAGCTGCGCGGCGACGGCGCCACGGTCCGCAGCGCGGCGGGCGACTGGGGCCAGGAGCTGATCGCCAGCCTCGGCGAGGTCTCCCTGCGCTTCGTCGGCGTCGACGGCCCCCGCTGGATGCTGCGCGGCGTCGTCGCGGGCCCCCCGGAGATCGCCGAGACCAGCGCGAGAGCTTTGCGTGAGCTGGTGCGGAACACGGTGGTTGTTCGTGGTTCGGCACCGATGCCGGTCCGCACCCCACTCCAGATCGACCTGCCCCCGGCCATCGCCGAGCACATCGCCGCCCAGAACCAGGTTCAGTAGCTCCCCTAGCCGTGGCGACGTTCGGCTCGACAGAAGTGAATGAGAAACACCGTTTCGGTTCGTGAACCCGCAGGTCAACAAGT # Right flank : TCAGTAGCGCAGGCGGGCGCGGAGCCAGCCGAGGACGGCGGCGCGGCCCAGGGCGGCGGGGTCCGCGCCGATGATTTCCAGGCGAGTCGAGCACAGTTCCGCCGTGGGGAGGGCCGCCGCCCAGGTTCTGGCCACTTCCGCCGGGTGGACCGGGTCGTCTGTGCAGGCGGCGATGCCGGTGGGGACGTCCAGGCCCGCCAGTTGTTCCGAGGTCGGGGCGGGGCAGGCCGCCGCGGCCTCCAGGGAGTCCGCCAGGCCGTCGCCGTAGGCGGTCCAGGCTCGGGTCAGCTCCTCGGCCAGCCAGGGGGCCACGCCGCGCACGGCCGAGGCGAGGGCGGCGGTGGTGCCGCGGGCGCGGACGTCGGCGGCGCTGTAGGTGGCGGCCAACGCGGCGGGGGCGCCGTCGGCGGCGCCGCACCAGCCGGGGAGGGCCAGCAGCAGGCCCGCGCACCGGGCCGGGTTGCGGGCCGCCCATGAGGCCGCGAGGTGGGCGCCGAGGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24972-25261 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZZ01000016.1 Actinokineospora iranica strain IBRC-M 10403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ================================== ================== 24972 47 100.0 34 ............................................... GTCTGATGGTGATGCCCGTGAGGTTTCGCCGGCT 25053 47 100.0 34 ............................................... GCCGGGTGATGACGTCCGTGAGGTCCCGCTGACC 25134 47 87.2 34 ...............G.......CG..A..C............C... CGTGGACGGCCACGTCGGAGAGCTTCCCTCGGCT 25215 47 89.4 0 ..C...........................C...T........C.T. | ========== ====== ====== ====== =============================================== ================================== ================== 4 47 94.2 34 GGTCGTCGTCGTGCGCCCGCGCCGAGCGGCGCTGCTTTCGAGGTTCC # Left flank : ACGCTCGCGAGATCGCGCCAGGTCCGACGCGCGCTGTCCCGCTGAGCGGCCACCTGGGCGACCTCCCGCCGCACACCCCGGCCCCTGGCCCTCCGCTGAACGGCCAGCCCCGCGAGACGCCACCCAACGGACGCGCGCATGGTGCTCCGCGCGACGGCCACGGCTGGGAAGAACCGTCCCACGACCACGCGTATGACGTCGCGGCCAACGGCCACGTCCGCGAGCAGGCCAACGGCCACGCCCGCGCCGCCGCGCCCGACGGCTTCCCGCGCGAGGTTCCGCAGAACGGCTCCCCGCGCGGTGTCCCGGCAAACGGCCACCTCCGCGAGGCGCAGGCAGGCGGCCTCGCGCGCGAGATCCCGCCCGGCCCGACCCGTGCCGTCCCGCTGAGCGGCCACCTCGGCGACCTCCCGCCCAACGGCCACCCGCACGAGGCCGCGCCCGACGTCCACGCCTACGAGCCGCCGCTGAATGGTGACGTCCGCGAGGTTCGGCCGACT # Right flank : CGTCGGGTGACGGCGGCGGAGAGGTTCCCTCGGCTGGCCGTCGTCGTGCGCCCGCCCCCGCTTTCGAGCCGCCGAGCGAGTCCGCGCCCGGAGTTCCCCGCCCCGGTGCGGCCGCCGAAGCCCCGCTGAGCGGCCACGCTCCACCGGCCCCGCCACGCTCCCACCACACACCGCCGAACGGCCACCGCCGCGACCTCCCGCCCGCCCGCGAGGTCCCGCTGCCCGAGCAGGACGTCCCGATTTCCGGCGTGCTCGGCGACGCCGCCCAGATCGGGCTGCCCCGCCTGGACGTGCCCACCGAGCGCGTGCGGCCCGCGGCCCAGCCACCGGTCGAGCGCGGCCAGCCGCTGCCGCCGACCGAGCGCGTCCAGCCGGTGCCGCCCCCCGGGCGGGTCCACCCGGCGCCGCCGACCGAGCGGGTGCGACCGGTGCCGCCGCCTGCGCGGGGCCGTCAGGCTCCGCCGCCGTTCCCGACTCGGCCGCGGCCGTTTCCGGCGGGC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGTCGTCGTGCGCCCGCGCCGAGCGGCGCTGCTTTCGAGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.80,-14.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 88403-88676 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMZZ01000016.1 Actinokineospora iranica strain IBRC-M 10403, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88403 29 96.6 32 ............................G GCATCGCGATCCTGTTGCACTACACCGCGATG 88464 29 96.6 32 ............................T CGTGCTGGGGAGAGAATCAGCCAGCGGCGGGG 88525 29 96.6 33 ............................A ACTCACCGACACCGAGTGGGCGCGGATCGCGGC 88587 29 100.0 32 ............................. TGGGGAGGCTGCGGAGTAGCAGGCACCCCGCC 88648 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 98.0 32 GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : CTGTCGGTGGGACTGACCGTGCTGGGGCTCTTGATGGTCGTCATGCGTGCCCTGCTGCGGCAGGCCACCACGCTGCGGACCGACATGGAAGCGGTGATCTGATGCCGATCGTCGTGCGCATCGACGTCGAACTGGCCAAACGCAAGATGAGCGTCGGCGAGTTCGCCGAACGCGTCGGCCTCACCCCGGCGAACGTGGCGGTCCTCAAGAACGGCCGCGCCAAGGCCGTCCGGTTCAGCACCCTCGAAGCCATGTGCCGAGTCCTCGGCTGCCAGCCCGGCGACCTGCTCGAATGGGTCGAGGACTGACCCGCGTCCCGCCGTGAGCCAAAGTCGGTTTTCCCTGGTTAGGGGTGGGTTCTGGCGGAGGCTGCCACGGCGCGGGGACGCACCGGGCTCGATTCCGGCACGGGCGTCGCCCGAGTGGTCCACAGGCTCTAGGCTCGACCAAAAGTGAATGTAAAACATTGTTCCGATTCCTAAACCCGCAGGTCGACAAGT # Right flank : CGGTCCTGGGCGGTGCTGAACAACGTGGTCAGGTCAGGGTGAGGGTGCTCGCGAGGGCTTGGGCGCCCGCGGTGACGGCCGCCGTGGCTGATCGGAACGGGGTGCCTGGGGGGTGGTTGGTCATCAGCACCACGATGTAGCGGTCGCCCGCGCCGAGGGTGCCGGTGGAGTGGACGGCGACGTGGTCGGCGGCGCTGCCCCAGGACTGTTTCACCGCCCAGGGGGCCGGGAAGGCCGACGGGATGCCGAAGTGCTGGTCGAAACCGTCCGCGGCGCGGCGGGGGGCGGCGCGCATGGGGTCGACCAGGGTGGGCAGGGTGGTCAGCAGGTGCTGGCAGGCGGCCAGGACGTCGTCCGGGGTGAGCGGGGTGTTGCCCCACCGGCCGGGGATGTCGGGGGCGGTGGGGCCGGTCCGGCCGAGGGTGGCGGCGGCCGCGGCCGGTAGGGCGTCGCCGCCGTGCAGGCCCCAGAGGATGCTGGCGTCGTCGTCGTTGCTGTCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //