Array 1 47543-48715 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADNEI010000007.1 Anaerococcus vaginalis strain BSD2780120874b_170522_A4 NODE_7_length_94245_cov_47.1338, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	================================	======================================	==================
     47543	    32	 100.0	    35	................................	TTTAGCTAAGACCTTGTATTTTTTATCCTTTAAAA   	
     47610	    32	 100.0	    35	................................	TAAAGATTTAATTATTATATCTTTCATCGTTTTTT   	
     47677	    32	 100.0	    37	................................	ATTTTAACAAGATTGAATATCTAAAATTTTTAAATTC 	
     47746	    32	 100.0	    34	................................	TAATTCTTATTCTTTGTACTTTGAAAAATTTAAT    	
     47812	    32	 100.0	    37	................................	CGAATATAATAAACTTTATAAATATACTCAATTTCAT 	
     47881	    32	 100.0	    35	................................	TCTAATTTCTCTATCTAACATATAAACTCCTATGT   	
     47948	    32	 100.0	    38	................................	TTGAACATCAGTTAAAAAACTATCAACATCATTAAAAT	
     48018	    32	 100.0	    35	................................	ATAATCAATATTATTTTTAGTTTTTGATAATTCAT   	
     48085	    32	 100.0	    36	................................	ACTAAATATTCCATTTAATTACCTTTCGTTCATAGC  	
     48153	    32	 100.0	    35	................................	CATTATCAGCATATAAATCTGCCTGAGCTATTTTA   	
     48220	    32	 100.0	    34	................................	AAATTCCTCAAATGCTTTAAGGGCAATCCTAACG    	
     48286	    32	 100.0	    35	................................	TAAATCTAAATCTTCAAGTTCGTCTAGTTCTGATT   	
     48353	    32	 100.0	    34	................................	TATTAAACGTCTTTTTGAACGTAAAAGCGTTAAA    	
     48419	    32	 100.0	    34	................................	TTTTTAATATTGTTAAGGATAAAAAAATAAATAC    	
     48485	    32	  96.9	    33	...........T....................	TTAAATGTACAAGATAAGGATGGCTTATATCAT     	
     48550	    32	  96.9	    34	...........T....................	AGTATTATCATAGTGCCAAAGAAAACAATTAAGC    	
     48616	    32	  96.9	    36	............G...................	AATTAAAAGATATTTCAGCAAAGAAGATTTAAATAT  	
     48684	    32	  68.8	     0	.......TT...GT.ATT...AT....T....	|                                     	
==========	======	======	======	================================	======================================	==================
        18	    32	  97.8	    35	GTCACTCCCTTCACGGGAGTGTGGATTGAAAT	                                      	       

# Left flank :   TTTACCGCATATTCAAGCACAACTTTTAAATAGTTATTTAAGAGGAGATATAGAGTCCTATCCACCTTATATAAGGAAGTGATAAATGCAAGTATTAATTACATATGATGTAAAGACGTCAAGTAAAAAGGGAAATAGAAGATTAAGACAAGTAGCTAAAATATGTACTAACTACGGGCAAAGAGTACAAAATTCAGTATTTGAATTAAATATCTATCCTTCAGATTTAGTAAAAATAAAATCTCAACTAAAAAAAGCTATAGATTTAGAAGAGGATAGCATAAGAATATACAATTTAGGGAAAAATTGGGAAAGAAGGGTAGAATCATTAGGAAAAGATGAAACATACAACCCTGAAAAAGATTTATTGATTATTTGAGGTTCTTATTTGAACATATAATAAGTAAATCTATCTCATATATTTGATAAAAATTAGATATATTTTTTTAAAATATAGGCCTAATTTTTAAAAAAAGTCTTGCAAAGACTCAAAATTTGCA
# Right flank :  TGATCCCAGGAATTAAAAAAATCAGAATATTATTTGCTAGTTTATATATGAAAGTTAATTTTTAATATAATTTTACGTTTTTATAGAAGAATTAATGCTTTATTATTCGTCTCATATTTTTTACTGAAATTTATCGAAAAATTTACTTTAAAGGAGGTGTTATGAATTTTATTGAACTTGTGAAGAATCGTTATTCTTGTAAAAATTTTAGTGATAAAAAAGTTGAAAAGGAGAAGATTGATATTATTCTTGAAGCGGGCAGGCTTGCACCTACTGCTAAGAACAATCAGATTCAAAGCATTTATGTGGCTAAGTCAAATGATGCTCTTATAAAAATTGATGAGCTTACTCCTTGTAGGTATAATGCTCCTCTTGTTTTGCTTGTAGCTTTTGATGAGAGTGAGGCTTTTGTTTATCCGGGAGGAAAATATAATACTGGTGTTGAAGATGCTACGATTGTTGCAAGTCACATGGTCTTGGCAGCTTCAAGCCTTGACGTT

# Questionable array : NO	 Score: 9.23
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCACTCCCTTCACGGGAGTGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [7,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-5.00,-5.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.74   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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