Array 1 339-1371 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN549132.1 Rahnella aquatilis strain OV588 EX24DRAFT_scaffold00026.26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 339 28 100.0 32 ............................ ACCTGCTTACGCCAACGCTTTTGCAAAAGTCA 399 28 100.0 32 ............................ ACTTTGAACCCGCGACACCTGAACAGGCGCAA 459 28 100.0 33 ............................ CGGGAACGGTGCAGACTACGGGAGCGCGCAAAA 520 28 100.0 14 ............................ GGNNNNNNNNNNAA Deletion [562] 562 28 100.0 32 ............................ GGAGTCGCGCAGGTCAGAGTTAATCGGTCGCT 622 28 100.0 32 ............................ GCTGGCGTAACGGGAATGCGGGGTGCAATGAA 682 28 100.0 32 ............................ TCAGGTTCCGACATAAATCTGTCGGCACAGCC 742 28 100.0 32 ............................ TTGCCAAAGCAGAAGCGCGGGCCCGTGATGCT 802 28 100.0 33 ............................ CCGGAGCCCCGAAACCAAAGGGCCGAGGCGGAT 863 28 100.0 32 ............................ CAGCAGATAGAATTTATTTGCGTCGATGTCGA 923 28 100.0 32 ............................ AGTGACCGCACCCGACAATCAATACTGGAGCC 983 28 100.0 33 ............................ CGTTAGGGCTTGCCGTGACTGGCCTGAATATTG 1044 28 100.0 32 ............................ GGGGCGGTAGGGGTGCAGGCATATGAACACTT 1104 28 100.0 32 ............................ TTCTGTCGAATCGTATAACCCCGGCACGGCTC 1164 28 100.0 32 ............................ TGCTGAAATTCGCGGGCCGTAATTTTGGCGAT 1224 28 100.0 32 ............................ TGGATGTGGCGAGGCCAGAAACAACACCTTGT 1284 28 100.0 32 ............................ ATCAAGTTGGCATAACCGGCCGTCGGCGCGTT 1344 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 31 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CTGTCTCTTATACACATCTCAAATTACGGGGAAATGGCCGTAATTTGAGAAATATAGCTTACTGATTTTAAAAGAAATATTTTCGAGTTACTCAAGCGCGAGCTTAAAATAATTCTTTTATAAAACAACAGCATAGAGACTTGTGTATAAGAGACAGCCCCTGCGAAGGGGAGGGTTGGGGTGGGGTATTAATGGCACCTCTGAACTAACCCTCTTTTTTGCACCTCCGCTAACCCATTGATTTCTATTAACCGACAATGCCCGCAAAAAAAGAGGGTATTTCTTCCCAAACAGCGATAATCTTTTACAGTTCAAAGCATAAAGCTGAAAACGCAACTG # Right flank : AAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTCACTGCCGTACAGGCAGCTTAGAAAGGTATCCAGTCAATTGCCATGACGGCTATGCAGTTCACTGCCGTACAGGCAGCTTAGAAAAGATAACAGCGTCGACCTCATTCTGACAGACCATTCACTGCCGTACAGGCAGCTTAGAAATGATCGCCTTCAAGCTCTTTTACCCGCGCCTCGTTCACTGCCGTACAGGCAGCTTAGAAAGGTATCCAGTCAATTGCCATGACGGCTATGCAGTTCACTGCCGTACAGGCAGCTTAGAAAAGATAACAGCGTCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1588-2398 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN549132.1 Rahnella aquatilis strain OV588 EX24DRAFT_scaffold00026.26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1588 28 100.0 32 ............................ GGTATCCAGTCAATTGCCATGACGGCTATGCA 1648 28 100.0 32 ............................ AGATAACAGCGTCGACCTCATTCTGACAGACC 1708 28 96.4 32 A........................... TGATCGCCTTCAAGCTCTTTTACCCGCGCCTC 1768 28 100.0 32 ............................ GGTATCCAGTCAATTGCCATGACGGCTATGCA 1828 28 100.0 32 ............................ AGATAACAGCGTCGACCTCATTCTGACAGACC 1888 28 96.4 32 A........................... TGCAGCCAGAGCGTGTGAGCCCGATAGACGTT 1948 28 100.0 33 ............................ GTTCACCTTTAGGCCAATGGTGGCGGAAAACAT 2009 28 100.0 32 ............................ TGAGTTTCCGGGTCAGTGCCTTGGAATACGAA 2069 28 96.4 32 .............T.............. AGTCGTCTGGCCAGCCTATCAACTGAAACGGA 2129 28 100.0 32 ............................ GGCACCCGCTCGGCGCTGTGCCATCTCTCGTT 2189 28 100.0 32 ............................ GAATCGCAACGGTTAGGGTCTGTGCCACTTTT 2249 28 100.0 32 ............................ AGCAAGGCGTGGAAGACCCGGCGCTGCTTGAT 2309 28 100.0 32 ............................ ATGGACGGGAAATTAAAAACCATGGAAAACGT 2369 27 89.3 0 .................T.....-.C.. | GTC [2388] ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGCATATGAACACTTGTTCACTGCCGTGCAGGCAGCTTAGAAATTCTGTCGAATCGTATAACCCCGGCACGGCTCGTTCACTGCCGTGCAGGCAGCTTAGAAATGCTGAAATTCGCGGGCCGTAATTTTGGCGATGTTCACTGCCGTGCAGGCAGCTTAGAAATGGATGTGGCGAGGCCAGAAACAACACCTTGTGTTCACTGCCGTGCAGGCAGCTTAGAAAATCAAGTTGGCATAACCGGCCGTCGGCGCGTTGTTCACTGCCGTGCAGGCAGCTTAGAAAAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC # Right flank : ACTCACTGCAAATCCTAAAAACTCTCTGGAAGCAGTATCCCATTCCCGCGATTTGCCCATTTTTAATGTGTGGATATCCAGTTATTGTCTGTTCGCAGCGGCAAAATCCGCAGTCAGGTGTAGGAACCTGAACCCTCATGGCGGATGTTTTAATTTCGCCATCACTTTGTATTACCAGCAAAAAACGAATTATTATCGTATATTGTTTTTGGTAACTCGGGCGGGGCAGCTTTCGGGCTGGTCGGAGAGGGTAACCGATATTCCTACCCCTGCCTGAGTTACCACCTTGAGTGTAGGAACTTAAGTGGTAGCGTGATACGCAATCTAATATTAGGTTCTAATCAAATGGATATTACTCTCACAAACGAAACATTGATGTGGGGATAATGTCGAAATTCAAATTATAAAATTTATATCCTTTATATTAAATGAGATATGTATCTGCTTCTCCCCTGCGCAGGGGAGGAGCAAGGTTACCGCGCAATCCTCTCATGCCAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 56497-57844 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN549132.1 Rahnella aquatilis strain OV588 EX24DRAFT_scaffold00026.26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56497 28 96.4 32 ....................T....... GATGAGCGTCAGAAAAACCCCTGACGCATTTT 56557 28 96.4 32 ....................T....... TGAATTAATATGTCGAAGACGCCGCCCTTGCC 56617 28 100.0 32 ............................ GTGGAAACACCAGCAATGAACCGGTCATGAAA 56677 28 100.0 32 ............................ TTCCATGCTTGAACCGTTAGGGCTTGCCGTGA 56737 28 100.0 32 ............................ AGCCGGAAACAGGTTCCCCGCGAAATTCCAGC 56797 28 100.0 32 ............................ GCCCACGGAAGCACACGCAATTCATTGCGTGC 56857 28 100.0 32 ............................ ACGAATCAAAAGAGGGTGTGCGCGGCGCGTTT 56917 28 100.0 32 ............................ GCTAATGAAACTAAATATTGATGATCTGCGTA 56977 28 100.0 32 ............................ CTTAACGAACCATGACGGCAGCAAGCTCAGTC 57037 28 100.0 32 ............................ CGTCACGCTGGCCTCCATCTCGTCCAGTTCGT 57097 28 100.0 32 ............................ TTATATAGGCAAGTTTAAGTTGTTCGACTTAG 57157 28 100.0 32 ............................ CGGTCATGGAAGCGCCGTTCGTCGAGCCGAGT 57217 28 100.0 32 ............................ AGTTGCTGCAGGCCAACAACAAAATCATTAAT 57277 28 100.0 32 ............................ AAATTGTGGCGTTTGTATTCTGTCCCGCTGCT 57337 28 100.0 32 ............................ TTTCCGGCCACTCCGAAAAGTCTCGCCAACGC 57397 28 100.0 32 ............................ GGGCATACCGCCGAGATTGCCAGTGTTCACCA 57457 28 100.0 32 ............................ ATAAATGCCAATCAAATAATTATTACCATGAA 57517 28 100.0 32 ............................ ACCCGCAGGTCAATATTGTCTGAATAGTTGCT 57577 28 100.0 32 ............................ GCATCATTGCAGTAATTCGCGACGAAAAGAAA 57637 28 100.0 32 ............................ GGGTGCGCCCTGACGCCGCCCACGAAAGCCAG 57697 28 100.0 32 ............................ GTAATACTTGAGTAAGAAAGCGCGAACCTCTC 57757 28 100.0 32 ............................ ATACACGGATGTCACTTGAAGCCGTTCTGGCT 57817 28 96.4 0 A........................... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTAGATTCGGTGGCGAAAATCTAACGTCAAGGTCGTGGGCTCGCCGCCCACACTGGCCCGGAGACCCGCAATCGCGCGGGCCTCTGGACTCCACGCTCTTTTCACTGCGCGCTGCCGCAGGCACGACGGACATATTCGGCCACTCCGGCGTATGGCGCAAAATCTTGCCGCTCAGCGGTGCCTTCATTTCGGGATTCCAGCCTGGGGTCTGGAACCTCTCATTCAGCAAGATTTTTGAGCACGCCAGTCTCGATCGAATAAAAACCTCGTTCTGATTCTCTCGCAAAATCAAATGCGGAAGGGTGTTGTCTTGCTCCTTCCCCTGCGAAGGGGAAGGCCAGGATGGGGTATGAATGGCATCTCGTCATTCACCCTCTTTTTTGCACTTCCGCTAAGCCATTGATTTTCCTTAACAAACAATACCCTCAAAAAAAGAGGGTTTTTCTGCCCAAACAGCGATAATCTTTTACAGTTCAAAGCATAAAGCTGAACACGCAACG # Right flank : ACATGACTCAATTTTTGGTAACGGTTAACCGCATAAGGATAAATTGCGATGACATGGAAATATGAGCAAAGCACAGGCAGGCTGTACAACGGCAGCGAATTAGTCGAAACCGGTTACTCTGGCAGCCTGACCAATAAAAACAACCCCGACCGCCAGCAGGTTAAAGGGCTAGGGCCGCTCCCTCGGGGAACATACAGAATTGCGGGACACTCAACGTCTAAAGGCCCGATGACCATTATTCTGGAGCAGACGTCGGGGGACGCGTTTGGCCGCTCATTGTTCCGCATTCACGGTGAAAGGGTTGACATGCCTGCAGGCTTTGCGTCAACGGGCTGTATTATTATGTCACGCTCTACCCGGCGGCGCGTTCTGCGCGAAGGCGGGACGCTTGAGGTCGTCCGATGAAGCGGCTCATGCTTTTGGGGCTGTTTCCGTGTCTTGTATGGGCTGGGGGAAATGTCACAGACTGGTCAGCTTCATGGAAGGGAGTCGAGTCAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2256-2404 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN549133.1 Rahnella aquatilis strain OV588 EX24DRAFT_scaffold00032.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2256 28 100.0 32 ............................ CGAATAATCCAAAGGGATTTCAAAATGTCTAA 2316 28 100.0 32 ............................ TGTTTGTAGATTTCCAGCATCTGCGCGCTGAG 2376 27 82.1 0 ............A........C.T.C.- | CG [2397] Deletion [2403] ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGA # Right flank : AACTCATTGCAAATCCTAAAAACTCTCTGGAAGCAGTATCCCATTCCCGCGATTTGCCCATTTTTAATGTGTGGATATCCAGTTATTGTCTCCTCGCTGCGGCAAAATCCGCAGTCAGGCTTAGGAACCTGTATTTTCGAGCGCGGCACTTTTATAAGTGTTGTCGGTATGTCTCAGCTTTATAAAGCGGATCCGTTACTGCATTATATTGTTCTGGTGACTCAGACAGGGCAGTCTTCGGACTGGTCGGTAGCCTCGGAATCGATTCCTAACCCTGTTTGAGTTGCCACCTTTGAGCTTAGGAACTCGGGTGGTGACAGTGACTTCCGATGGAGAAAACTCAATGACAATTACTGCCGAAACATCCCCCGATTCATGGACACTCACCGACCGCTGCCGGTTACTGGCAAATGCGCTGGTGAATCCGCAAAACAAAGGTTCTCAGGACAGACTTTGCATCATGCTGCACAACCAGCTTGAATGCCTTGAAGCGACCTTAT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4484-4991 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN549133.1 Rahnella aquatilis strain OV588 EX24DRAFT_scaffold00032.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4484 28 100.0 32 ............................ CTGATGGGTATGAGTCAGGTAGTTACCAAGTT 4544 28 100.0 32 ............................ AAGGGCGTGGTGATCAGGTTTCATAAAGAAGG 4604 28 100.0 32 ............................ ATGAACAACCTTAGCTCTGAAGAACTGAAAGA 4664 28 100.0 32 ............................ AAAATGGCTGCCTTGATGAGTGCGGGCGACAA 4724 28 100.0 32 ............................ TGAAGAATGTCCGGGAACGTGGCCACAGCGGC 4784 28 100.0 32 ............................ AATCACAGAAGAAACGAAACGCCGCGCCCGTA 4844 28 100.0 32 ............................ GAAAACAGTAGATTGAACAAATCTCGAGTTTG 4904 28 100.0 32 ............................ TGACGTAATGAAACAGGATATGGGATCACATA 4964 28 78.6 0 ............A.......AAA.AC.. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.6 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : AACCTATCCCCGCCCCAAATACTCAACGGAATAAATTTAACAGTTTAATTAATTCACTAATGGTTCACATCTGAAAACAAAATAAAATTTACTCACGCAAATTTATCCAAAAACAAATGCATCAAACCGTTGATGTTTTTGAAAATGGGATTATTTTAGATCCGGTCATTTCTCATATGAAAGGAACTCAACATGGCCAACGCATTGATGCCCGCCGAGTTAAAAACGATCCTCCATTCCAAACGTTCAAATATTTATTACCTGCAATATTGTCGTGTATTGGTCAATGGCGGGCGGGTTGAATATGTGACGGAAGAAGGGAAACAGTCGCTGTACTGGAATATCCCCATTGCCAATACCACGGTGGTGATGCTGGGAACCGGCACATCAGTGACGCAGGCGGCGATGCGTGAGTTTGCCCGCGCGGGGGTGCTGGTTGGGTTCTGCGGAGGCGGAGGAACGCCACTTTATGCGGCGAATGAAGTGGAAGTGAATGTCTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 15034-15421 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN549133.1 Rahnella aquatilis strain OV588 EX24DRAFT_scaffold00032.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15034 28 100.0 32 ............................ GAAACTGAAAACCAGTACGCCAAAACGCAAAA 15094 28 100.0 32 ............................ AGTACTCCTGATATTCCTGCCCGTTCTGCTCA 15154 28 100.0 32 ............................ ACTGTAGGTGGCAAAGTCAGAGCTGCCGAAAT 15214 28 96.4 32 ............A............... ATTACTCAAAGATTGAAAGACGGCAATATGTC 15274 28 100.0 32 ............................ GTTCTGAGCGAACTGGTGATCAATGGTCGAGT 15334 28 100.0 32 ............................ TGCTCACAATCACCCTGAATAAATCGGGACAT 15394 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.0 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CAGGCGGGGCAGCCTTCGGGCTGGTCGGAAGGTAGACCGATCTCCTACCCCCGCTTGGGTTACCACCAATTGCGTAGGAGCTTTGGTGGTAGCAGATATGCATCTGCCAAAGGTTTTTAGTTAATGACAACCCACACAAACGAAACATCCCCCGATTCATGGACACTCACCGACCGCTGCCGGTTACTGGCGAATGCGCTGGTGAATCCGCAAATGGCCGAAAGGTGAAAGACTGATTGCCGAAGCGATTGGCGTAAATGCCGAAACCATCTGGCCGAGCCGTTACACCGAAATCAAATAGAATTGAGATCAACACCCTCCCCTGCGAAGGGGAGGGTTGGGGTGGGGTATTAATGGCCTCTCTGAACTAACCCTCTTTTTTGCACCTCCGCTAACCCATTGATTTCGATTAACCGACAATGCCCGCAAAAAAAGAGGGTTTTTCTTCCCAAACAGCGATAATCTTTTACAGTTCAAAGCATAAAGCTGAAAACGCAACT # Right flank : ATTTGTGTTACCTGCATCATCAGGGCGGCGGAAGTCCACTGCCGCAGCTCCCCAAACTCATCCCATCAAATCCCGTTCAACAACCCCTTTACGCCACATTGTCGGCGACATTCCCAGCCGCTGGCGGAAGTGATGACGCAAAGTTTCCGGCGATCCAAACCCGGCCTGTTCGGCGACGCGGTCAATACTCAATGTGCCGTTTTCCAGCAGGGCGCAGGCTTTTTCCAGCCTGACGCTCAACATCCATTCGCCCGGCGTGGTGCCGGTAGCATCATGAAAACGACGCAGGAAGGTGCGGCGGCTCATACCGGCTTGTTTGGCGAGCTGTCCAATCACCAGCGGCGTGTTGAGATGGCTGCGTAAATCGTCGAGCAGCGGGGCGAGTGTTTTTGCCTGATGCCGCGGTACCGGTTGCTGAATAAGCTGTGCCTGATTCCCTTCGCGCAGCGGCGGTGTCACCATCCGTCGTGCCGTGCGGTTAGCGACTTCAATACCGTAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 742-352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUHL01000007.1 Rahnella aquatilis strain OV588 EX24DRAFT_scaffold00005.5_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 741 28 100.0 33 ............................ AGGGTTCCAAGCTCACTGGCAATCTTTTCTAAT 680 28 100.0 32 ............................ TAATATAAAAAAGCCGCACAACGGCGGCGGGT 620 28 100.0 33 ............................ CGATAGCCGTCCCGATCAAAGCACTCGTTACAA 559 28 100.0 32 ............................ GGTCAGAATTGGTAAATTAGTCAGAAAACCGA 499 28 96.4 32 ...........C................ ACCAGCCGGAACCCAGCGACGGCGACGACAAT 439 28 96.4 32 ................A........... AAACAATTCCCATGAGAGTTTGTTTGCAGGGC 379 28 75.0 0 ....................TCGC.TGC | ========== ====== ====== ====== ============================ ================================= ================== 7 28 95.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAACCGGCGGCAGATGGCTCGGCGTATCAGGATTACGTGCTGACCGAAAAAGGGCGGGCGCTGCAACCGGTGCTGGTCGCGCTGGGGCAGTGGGGAAGTGAATATTTGTTTGAAGAAGGCGAAGCCTGTACGCAACTGGTGGATAGTGAAAACCGCCAGCCGCTGCGTAAGCTGGAAATTCATGCGCAGGACGGACGGGTACTGGAAAGCCGGGATATTACGCCGATTATTCCTGAGATTTAATTCAGAGCTCGATCGGCTCCTCCCCTGCGAAGTGGAGGAGCAGAAAGCAAAACCCGCAATGGCTCGATCGGCTCCCTCCCCTGCGAAGGGGAGGGTTGGGGTGGGGTATCAATGGCATCTCAGTCACAACCTTTTTTTTGGGATGTCGCTAACTCTTTGATTTTAATGAATCACACGAGCCGCACAAAAAAGAGGGTATTTCTGCAAAAACAGGGATAATCTTTTGCAGTTCAAAGCATAAAGCTGAAAACGCAACT # Right flank : CAACTCACTGCAAACCATAAAAACTCCCTGGAAGCAGTATCCCACTCCCGCGATTTGCCCATTTTTAATGTGTGGATATCCAGTTATTGTCTGTTCGCTGCGGCAAAATCCGCAGCCGGGTGTAGGAGCCTGTTTTGCTACCATGGTGCCGCTAATGCGTGTGCCATCGCTTTGTAACACCTTTATTAAACGGAATTATTCCGTATATTACAAAGGTGACTCAGGCGGGGCAGCCTTCGGGCTGGTCGGAAGGTAGACCGATCTCCTACCCCCGCTTGGGTTACCACCAATTGCGTAGGAGCTTTGGTGGTAGCAGATATGCATCTGCCAAAGGTTTTTAGTTAATGACAAC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //