Array 1 12940-14670 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBII01000034.1 Phocaeicola coprophilus JCM 13817, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 12940 47 100.0 30 ............................................... CTATGCGGTGGATATTGACGGTGAGGTGTC 13017 47 100.0 29 ............................................... GAGTTGTCAAGCGTGCCGTATCTGGATCT 13093 47 100.0 29 ............................................... TAGAAGGATCCGACACAGATACTATAATC 13169 47 100.0 29 ............................................... AAGAAATTGCTAATATTAGCCCAAGCCCG 13245 47 100.0 30 ............................................... ATATTTGCAATACCCAGCAAAATCTCCAAG 13322 47 100.0 29 ............................................... GACTTGAACAAGAAACACAGAAAAATCAA 13398 47 100.0 30 ............................................... CGCAAAGGATATTAGCTCTTCGACATCTTT 13475 47 100.0 30 ............................................... AAGCGGAGCAAACATTAATATGTTTGCGAA 13552 47 100.0 29 ............................................... ATAGTAAAAAAAGTTAGTATCTTTGTAGT 13628 47 100.0 30 ............................................... TTCCCTAGTATATTATACAAGATCACTACA 13705 47 100.0 30 ............................................... AACATTCCTTTACTCTATTTTCTACGTTTT 13782 47 100.0 30 ............................................... AAGACAGAAAGGTATGAGCAGCTTTAAGGA 13859 47 100.0 29 ............................................... TTGAATAGCGCCTGTTTCTTTTCAAAATT 13935 47 100.0 29 ............................................... AAATGCAAATAATAACCAAAAACTCTCAG 14011 47 100.0 30 ............................................... TTCTTTACCTATAATAAAATCACATATAAA 14088 47 100.0 29 ............................................... TGTATGCCTTGCGCACCAATTATCATTAC 14164 47 100.0 29 ............................................... TGTATGCCTTGCGCACCAATTATCATTAC 14240 47 100.0 30 ............................................... TTAACTGGGGAGAGGTTGGTAATGTTTGTT 14317 47 100.0 30 ............................................... GCATGCATGAATGTTCCGTAAGCAGCCCTT 14394 47 100.0 30 ............................................... TACCGATTGCGTGAGATCCTTGCAGACAAA 14471 47 100.0 30 ............................................... AGTTAAATGGAAATTATCGTTTGATGGATA 14548 47 100.0 29 ............................................... GGATGCTTCAATCACCTCATGAGATTGAG 14624 47 85.1 0 .............................T..G.GT.....G..CG. | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 99.4 30 GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Left flank : CTGCCTCTTTATATAAATGCTTTAGTGGTGAATTGCGTAAAATTGCTTATCCAGAAATGTGATGGATAGATACAGTGAATATCGTATTATGTGGATACTTGTATTTTTTGATTTGCCTACAGAAACTCAAAAAGACAAGAAAGCTTATACCTTGTTTCGTAAGAACCTGCAGAAAGACGGCTTTACAATGTTTCAGTTTTCTATTTATGTTCGCCATTGTGCCAGTTATGAAAATGCAGAAGTTCATATCAAACGTGTCAAGTCTTTCCTACCGGAATTTGGTCAAATAGGGATTTTATGCATAACAGATAAACAGTTTAGCCAGATAGAATTATTTTATGGGAAGAAGCCTCAAATTAAGAATGTTGCTGGACAACAATTGGAGTTGTTTTAGAAATAAAAAATCCCGTATTTAAACGGGATTTTTTATTAGAAATATTTCTTTTTTATTTCTAAAACGCTTTGCAACTTATTGGTTCTTATCTAGTTATTAGATATCA # Right flank : CACAATACCTTCGTCCGTTGAACTGGTCAATGCAAAAAAAACGACCGCACGATTGGCCCTCAACGACCGCACGATTGAGCTCCAACGACCGCATAATTTGCCTTGATCGACCGCACGATTCCGGAGGCCTGTCAGAATGAGTTTTCAGAGGCTGGAAATACCTTTGGGAGAGGTGAAATAAAGCCCGCGGGCTTTTTAAAAAACGTTTCGGGCTTTGAAGGAAAAGACTTCGGGCTTTTGAGTAAAACGTTTCGGCGTTTTTCTGTGCTTATGCTGAAGCTTTTCTGTTAAGAATCTTCTTGAGAATATTTTTTCTTGCAATGGCAAGTCCGGAGGACAACGGCTCATTGTCCAACAGGCTCAGAATGTTTTCAAGTTCTGACAATAAGTCAGTATGAAACTTGCACTGTTCGTATGAAAGCTTTATGCATAAGGCTCTGACTCCACATGAGTTTTCACAGGACGTAATTCCGGACAGGCAGTAATCGATGAAGTCGGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 252-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBII01000020.1 Phocaeicola coprophilus JCM 13817, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 251 33 100.0 33 ................................. TGTTTGTGTGATTTTTTACAAAACTAGCTTATT 185 33 97.0 33 ................................T GAAAAGAATTGATGAACTCAAGGTGGTTTATCA 119 33 100.0 33 ................................. GCTAGTTATTAACAGAACTGACGAAACAGAGGA 53 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 99.2 33 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Left flank : ATATTGATGATTATCCTGTATTTTTAATTAAATAGTGTATTATGTACATTCTAGTAACATATGATGTGGACACGACAAGTAAAGAAGGCGCTCGTCGTTTACGATGTGTGGCTAAAGCATGCCTTAACTATGGGCAAAGAGTACAAAATTCTGTATTTGAGTGTGAGGTTACTGAAGCACAGCTCTGTACATTAAAAAATATAATTGGCAATGTTATTGATACAAAACAAGATAGTGTCAGGTTTTATTATCTTAATCGAAACATAGCCAGAAGAGTAGAAGTTTTAGGGAAAGAAACATCATACGATGTAAATGATGTAATGATTATCTAAAGTGCGAAACTTATGTAATACACGTTTCCTTGAGTTTTCGCACATATTGAAATATAAGGAATTACATTTTTACATTTAGTATAATATAATCAGAACTGTATCTTAATTATTAATTTCGCAAAAGCTACAGTTTAAATATCTAGAAAACTGATACATATCTAAGAATCA # Right flank : AAATCTAGACATAGAAGGATG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 75429-74406 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBII01000008.1 Phocaeicola coprophilus JCM 13817, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 75428 33 97.0 32 ................................T CAACTGGATTGACAAAAGGAACCGGAAGTTTC 75363 33 97.0 33 ................................T GCAAAAAGTAGAGGCATTGGCTGATTTCTTTGA 75297 33 100.0 33 ................................. TGTCATGGGGCGATATGGATGAAAATGGGAAAC 75231 33 100.0 33 ................................. GGAAGCCGGAGTCAATCCGGAAGTGATCATCAA 75165 33 100.0 33 ................................. AGACTTATCCCAAATTGAGGATCGGTAAATACA 75099 33 100.0 33 ................................. GTGTAGCCAGCGTGACAAACAACAACACGCAGA 75033 33 100.0 33 ................................. TAATTCTATGGCATAACTGTACCCGCATGGGTG 74967 33 97.0 32 ................................G TTGAAAAGTACAAGTACCAGTATATTGACAAG 74902 33 100.0 33 ................................. TATAGATTTGGTCAGGATAATCCGGTTAATATA 74836 33 100.0 33 ................................. TATAGATTTGGTCAGGATAATCCGGTTAATATA 74770 33 100.0 33 ................................. CTAAAACCTACTATATCGGCGAAGCTAAAAAGC 74704 33 97.0 34 ................................G CCATCTTGTCCTTCACCTGCGTGTCGATGTCGGT 74637 33 97.0 34 ................................G CCATCTTGTCCTTCACCTGCGTGTCGATGTCGGT 74570 33 97.0 32 ................................T TTACTCTTTTGATTATTTTTTGTTACATTTGC 74505 33 97.0 34 ................................T TTTGTATATAGGTTTTTCACGAAGGATATCCAGC 74438 33 90.9 0 .....................C..G..A..... | ========== ====== ====== ====== ================================= ================================== ================== 16 33 98.1 33 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Left flank : AAAATGAGACCATGATACAGAAAGATTACATTTCAAAGAACCACTCGAAGTTTCTCATCAAATATCACGTGATATTTGTATGCAAATACAGGAAGAAGCTACTCATTGGAGCAGTGGAATATGACATGAAGCAAATCATGCAGAACATATCAGACCTGTCAGACTTTAACATTGAGGTCATGGAAACCGACAAAGACCATATTCACATGATGATATGCAGCGAACCAAAACTCTCTCCGCTGCAAATCGTAAGGAGGCTAAAACAAATGTCAACAACTGCCATTTGGAAAAGACATGAAAATTACCTTAGACATGTATTTTACTGGGAAAACACATTTTGGACGGATGGATATTTTGTGTTATCAGTCGGAAATGTCAGTCAGGAAACCATCAAAAAATACATCGAAAAACAAGGGTAGCTGCGCTACCCCACATTTTTCATCCCCTAAACTGAAGATTTAGGGGTTTTCAAATGCGAGTTCCTATAAAACAGATGTTTA # Right flank : ATTTAATGGTACTCATATTTACTGATAGTCTGCTTCCACCGGTATTATCTCTTGAATCAGGCACGACAGATCCATCATTCCGGCTTCCTCCGGCACTTCCTCCGTTATCAGATCCTCGCTGCTCTTGAACAGGTTCAACGCTTCCTGCATCTGGTCTGTCTGCATTATCCACCTTGTCAGCTTTTTCTTCTGCTGTGGATCGTTCAGCTTGTTCTGGTCCGGATACGGTAGTATTACCGGTGCTTCCCATGTCATTGTCAGATCCGACTTTTTTGTCTGATCGTACGGATTTTCCCCGTTCTCCAGACTTAGGTCTATTGCTGACATTATTGTTTGCTCCACTTCCTTCTGTGTCAGTGGTCCGGGCTCCTCCTTTTGCACCGTTAAAGAGATTCCCCATTTGCTGTAATGAACGTATATCATCTTGAACTCGGCTATATAATTCTTCAAAGCTGTTTACCTGTTTCGCTCTGGCTTTGCTCTTAACCAGTGGAGCTATG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 77784-77220 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBII01000008.1 Phocaeicola coprophilus JCM 13817, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 77783 33 97.0 33 ................................A ATACACGTGCGCCGAAAAAGACACGTAAGACAA 77717 33 100.0 32 ................................. TGTTTCATAAGTTAGCAAGTGTCTAGCTGTAT 77652 33 100.0 33 ................................. CCGCCCAGCGACGGGTTGGCCCATCGCAGCAGG 77586 33 100.0 34 ................................. GATATTGGTGCTGTAAACTTTACGAGAGATAACC 77519 33 100.0 33 ................................. ACCGCTGAGTTTTTCTTGTAAGGAACATTGCCT 77453 33 97.0 33 ................................A ACATCAAAAAGCGCATAGCAAAGAAAGCTCTGG 77387 33 97.0 34 ................................C GGATGTTGTCAATATTGGAATAGCTGCATCCCAG 77320 33 97.0 35 ................................G ATTAACAGGGCAGAAGTCCTGGGCGGCAACGTCTG 77252 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= =================================== ================== 9 33 98.3 34 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACT # Left flank : TATAGAAGGAAAACCAATTTGTAT # Right flank : TAACTTTGTATTGCAAGGTGAACTACCGCTAAACTAAAGATTTAGCGGCTTCGGAGATACCAATACCTCCTCTCTTTTCCTGCTTCTTCCTGCCATTGCTTTTTAGGACACGAGGTCGGTCATCCACAAGAGGACAGTCCACAGGCTTGACTTTCCCACGCTCCGTGGGTAGGGCTTTCAAGCCAAATTCCTTGATGTTGCAAGCGGCATTGAAGTCCCGGTCGTGATGTGTACCACATTCCGGGCATGTCCAACTGCGCTCGCTAAGATTCAATCCTTTGTACACATGGCCGCATTTGCCGCAGGTCTTCGAACTTGGGGCAAAGCGGTCTATCTTAATGAGGTTCACACCATACCAACTGCACTTGTATTCAAGCAAAGTTAGGAACATACCGAAAGAAGCATCTCCTACGGCTTGTGCCAAATGGTGGTTACGCTGCATCCCTTTCACGTTCAAATCTTCCATGCAGATAGTGCGCACTTGGCTGTCGTGCGTGAGT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //