Array 1 466145-470876 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAYI01000018.1 Brachyspira aalborgi strain PC3053II PC3053II_contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 466145 31 100.0 37 ............................... ATCAATGTTTCTACAAAGTAATTTTTATGATTTATTT 466213 31 100.0 36 ............................... TATGTTTGCATTCCTGAAGTTTGCGCTGGTTGTCCT 466280 31 100.0 36 ............................... TCCACTATCACCATATCAGATATTTTATTGTCTGTT 466347 31 100.0 36 ............................... AATAAAAAGCCGGTAAGTAGCGACAATGGAATAACA 466414 31 100.0 36 ............................... ATCGCCATTTTTACTAAATACAAATTCGTCATAAGC 466481 31 100.0 36 ............................... CCGAAATTAACTCAAAATACGAATGGAATATATGAA 466548 31 100.0 37 ............................... TTTCTAAAACTACATAAGGCTCATCTACAAATACTTG 466616 31 100.0 39 ............................... CTAATATAACGGCTAACATATGGGGAGGATATGCCAAAG 466686 31 100.0 36 ............................... AAATGAACAATTAACCGGCATAAACACCGCAGTAAA 466753 31 100.0 36 ............................... GGCGATGTCATAAAGGTGTCTAACCAATGTGTAATA 466820 31 100.0 36 ............................... ACAAAATATAAAACATCAAGAAAAATGGAATGCAAG 466887 31 100.0 36 ............................... AAACTTTACTTTGTAGTTTGAAAAACTCGGGTTTAT 466954 31 100.0 37 ............................... TCCATTGGTTCGGTGTAAAACTTTAATTTTTCTGCGC 467022 31 100.0 36 ............................... GGTCTTGTTTTTTCAATGCTTGATGGTTTCCATTTT 467089 31 100.0 37 ............................... CTTCTGGCAATAATTTATTTTCTATATACTCAAATAA 467157 31 100.0 36 ............................... TATAGTTTATTCATTTCATCATATTTTAAATATGTC 467224 31 100.0 36 ............................... TTTCGCTCGCTATTTTCATTATAACCCATTACCGTC 467291 31 100.0 37 ............................... AAATTAGATTTCCATACAATTCGTGGCATGTCTATTA 467359 31 100.0 35 ............................... TTTTTTAATTTTATAAATAATTTTTATCTATTCGC 467425 31 100.0 36 ............................... CTTCGGCTTGTCTTACAGCTTCAAGCCTTTTGTTTT 467492 31 100.0 37 ............................... ATTTGCTTAATATATCGTTTCAAGTTTTTACTCAATA 467560 31 100.0 37 ............................... TGAAACTAAACTTAATAAAGATTATAAAGATTTAATA 467628 31 100.0 35 ............................... AGGATTGATATTTTTACAATTTGCTAATAATAAGT 467694 31 100.0 36 ............................... CGATAACTTTATTTTTTTCTTTCAATATATTATTTA 467761 31 100.0 36 ............................... TATTAATAATAAACTTGAAATACCCGAAAGATTTGC 467828 31 100.0 36 ............................... AATAACAACAGTGACATCCGCAATGGCGGGTATTTA 467895 31 100.0 36 ............................... AGATGTAGCCGTATGCTTGTCTGAAATAGTCTATTT 467962 31 100.0 36 ............................... GCAGTCGCACTCGCGAATGCTGTTATTAATTCTTGT 468029 31 100.0 36 ............................... AGATGTAGCCGTATGCTTGTCTGAAATAGTCTATTT 468096 31 100.0 36 ............................... GCAGTCGCACTCGCGAATGCTGTTATTAATTCTTGT 468163 31 100.0 34 ............................... AGGTAGCCGTATGCTTGTCTGAAATAGTCTATTT 468228 31 100.0 36 ............................... GCAGTCGCACTCGCGAATGCTGTTATTAATTCTTGT 468295 31 100.0 36 ............................... CGCTTTCGGTAAAGATTTAAGTGCATTCGATATGTT 468362 31 100.0 36 ............................... TCTCTCTATCCTATCCAATCTGTCCGAACTTTCCTT 468429 31 100.0 35 ............................... TAAAAACTAAATAAGCAAGTATTCTTGGATTTTGA 468495 31 100.0 36 ............................... TCTTCTATAGTATGCGTTATTTCGCTTACTAATAAT 468562 31 100.0 35 ............................... GCATCGCAGAATGCTATTGCTTCTTCGTCTACAGG 468628 31 100.0 36 ............................... CGCCTTTTATTTCAAGCGTTCCCTCGTCTGTAAACT 468695 31 100.0 35 ............................... GCATCGCAGAATGCTATTGCTTCTTCGTCTACAGG 468761 31 100.0 36 ............................... CGCCTTTTATTTCAAGCGTTCCCTCGTCTGTAAACT 468828 31 100.0 35 ............................... GCATCGCAGAATGCTATTGCTTCTTCGTCTACAGG 468894 31 100.0 36 ............................... CGCCTTTTATTTCAAGCGTTCCCTCGTCTGTAAACT 468961 31 100.0 36 ............................... AATACAAAATATGGTAATACAATTTTTAAAAGATAA 469028 31 100.0 36 ............................... CAAAACATAGACGAATTATATATATTTGATTATGAT 469095 31 100.0 36 ............................... AAAAATCGGACACCTTTTCCGAAAAATCGGACACTA 469162 31 100.0 37 ............................... GATAAAATAATTCCTATCACAGCTCGTGTAATGTTTG 469230 31 100.0 36 ............................... TGACTTACTACTCCGCTTTTTTCAAGTCCGTTCTCT 469297 31 100.0 37 ............................... TTAATTGATTATGAAATGTATAGAGAAAAATATAATA 469365 31 100.0 36 ............................... TCGTTTTTAATATTGATTAAAATATTACAATCGCAT 469432 31 100.0 36 ............................... GTCCGTTTATTTGTAATATTCAAGCCTTTTAATCGT 469499 31 100.0 36 ............................... TTTAATCGACTGTATTATAACTTATAAAAGGTTTAC 469566 31 100.0 36 ............................... GTTCGTTTTACGCTGTCGTTGTTGTTTCAGTCGGGC 469633 31 100.0 37 ............................... GAGCCTGCGGGAATTGACGATTTATACGGAGACAGTC 469701 31 100.0 36 ............................... TATATTATATTACTTCTACTTGCACTAAAACGAATC 469768 31 100.0 36 ............................... ATTTATTTAGAAAATACAGAGCCTTTATCGGCATTA 469835 31 100.0 36 ............................... TGGCTCAACTACGGCAAAAATGGTTGTTTATGACGA 469902 31 100.0 36 ............................... TAAATTTCTAATTGCTACTACGAATGTTCTTGTTTG 469969 31 100.0 36 ............................... ACAAATATATACATAGAAAGATACATAAAAACAAAA 470036 31 100.0 36 ............................... GCAATCGCACTCGTGAATGCTGTTACTAGTTCTTGT 470103 31 100.0 36 ............................... GCCATTGCAGATGTTATTGTCGTTATTAATTGACTA 470170 31 100.0 37 ............................... TATTAAGTATTATTGATTAAAGGACGGACGATGACTA 470238 31 100.0 36 ............................... TCGCTTTTGCTTGAGCGTTGCTTTCTACTACTAATT 470305 31 100.0 37 ............................... AAATATATTAAATTAAAAGAAATAGAAAGGGAGTTGT 470373 31 100.0 37 ............................... ACATGGGAACCAAGCGATATAAGTAAAACAATGCCGG 470441 31 100.0 36 ............................... CCAGCAACTTACTGTGTTTTTATGCCAACATAGAAA 470508 31 100.0 36 ............................... TGCCATGAACCTGGCTCCTGTAGTTTATTTAATATA 470575 31 100.0 37 ............................... AACTCAAACGCTTTTTATACTTCGCTAATATGGGCGA 470643 31 100.0 36 ............................... TCAATTATTTATTGAAAGATTAGAGAAATTAAACCA 470710 31 100.0 38 ............................... TATATCGCCTTTCGCTACTGCGGGCTGTAAGCCATTTA 470779 31 100.0 36 ............................... AAAAATCGGACACCTTTTCCGAAAAATCGGACACCT 470846 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================= ================== 71 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : ATTTGCTCGGAGAAAAAGAATATTCCCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAGGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACATATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTGAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTATAATATATAATAATTTGCGGATTATCGACAGACGATTTTTTAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAAAGAGAAAAAACGG # Right flank : TTTATCTTTTTGACCATTTTCAAATTATTTATAAAATATTTTCATTTGTAAAAATAATATTTTTTTAAAACTGCATGATAAAAATAACCTATTGCCACAGATATTATGATCAATAATTTAAATCCAATCTAAAATTGAGAGGATATAAAAATTTAAAGCCATTATCCCCCCCCCCTATAAAGTTATCAAAGAATTTATTTCTGAAATTCTCTCGCCACTTTTTAACGGGAATAAACCAAGCCAAATTATCAACTTTTTCTTTATTCATTTTAATTGAAATTCTAATTCCAAATAAAGTTAATCTCAAATACTCGTTATTATTCGATATTCCAAAAAGCGTCCACCAATTACAATTTAATCTCAATTTTTGATAATCATTATTTGAAATCGTTTCTTTATTTTTAAGCGATAATTCTCTTTCTAATCTTTTATACTCGAAAGAAACAGGCTCAAGAATGCAAGATTGTTTTATAAATGTTTCTCTATCTGAAAAATTATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [76.7-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //