Array 1 229809-230994 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTK01000002.1 Salmonella enterica strain BCW_3376 NODE_2_length_357575_cov_2.75868, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229809 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 229870 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 229931 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 229992 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 230053 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 230114 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 230175 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 230236 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 230297 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 230358 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 230419 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 230480 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 230541 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 230602 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 230663 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 230724 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 230785 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 230846 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 230907 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 230967 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 247664-249279 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTK01000002.1 Salmonella enterica strain BCW_3376 NODE_2_length_357575_cov_2.75868, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247664 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 247725 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 247786 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 247847 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 247908 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 247969 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 248030 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 248091 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 248152 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 248213 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 248274 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 248335 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 248396 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 248457 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 248518 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 248579 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 248640 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 248701 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 248762 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 248823 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 248884 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 248945 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 249006 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 249067 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 249128 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 249189 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 249250 29 100.0 0 ............................. | A [249277] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //