Array 1 71935-70074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUV01000023.1 Salmonella enterica subsp. enterica serovar Derby strain CVM N30679 N30679_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 71934 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 71873 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 71811 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 71750 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 71689 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 71628 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 71567 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 71506 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 71445 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 71384 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 71323 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 71262 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 71201 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 71140 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 71079 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 71018 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 70957 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 70896 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 70835 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 70774 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 70713 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 70652 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 70591 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 70530 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 70469 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 70408 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 70347 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 70286 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 70225 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 70164 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 70103 29 93.1 0 A...........T................ | A [70076] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 89213-88575 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYUV01000023.1 Salmonella enterica subsp. enterica serovar Derby strain CVM N30679 N30679_contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89212 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 89151 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 89090 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 89029 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 88968 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 88907 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 88846 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 88785 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 88724 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 88663 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 88602 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //