Array 1 14480-14048 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWI010000021.1 Enterococcus sp. MSG2901 scaffold1.21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14479 36 100.0 30 .................................... AAAAAACAATAGGCTTTATAACTGCGCTTC 14413 36 100.0 30 .................................... GTAAAAGTGAATACTTTTTCTCCATTAAAT 14347 36 100.0 30 .................................... GAATAAAGAGGAAAGTATACTTGTCGGGGC 14281 36 100.0 30 .................................... AATTTGGCAATGCAACAGCTAGACGTCTAC 14215 36 100.0 30 .................................... AGCCTTCAAAAATACTGTCTTTAATAACTG 14149 36 100.0 30 .................................... CATCTTTTGTTTCTTTTACAAACACGTTAT 14083 36 80.6 0 ...........................CA..TTTTA | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.2 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : AGTTCGTGATCCTCGAGTTGAAAACGTGACGATCACGGATGTACATGTAACAGGTGATTTACAACAAGCAACTATCTATTACAGTATCTTATCTGATCTTGCTTCAGATAAGAAAAAAGCGCAAGAAGGCTTGAGTAAGGCAAGTGGGCTAATCCGTCGTGAATTAGGTCATAACTTAAGTATTTACAAGACACCTGAGCTAATCTTTGAATTAGATGAGTCTGTTGGTTATGGTAACCACATCGATGAGCTGTTGCGTAATTTGAATAAGGACTAACAAAAAAAGCATCCATCCCTATCAAGGAAAGTATGGATGCTTTTTTGTTTGAATTAAAAAATAAAAGTTTATTGGGAAAATTATTGAACAAGTAGTTCCTATGTTATAATAAACAAAAATGCGGTCTTTGAAATAAAAATAGCCAAGCTAGATGAGCATTCAAACTGAAGTTTTGCTATGAACGAATAGCGCGATTACAAAACCTCAAAAATTTTAATCCGAG # Right flank : AAGCTATAAAGTTTTTTTCATTATCCAAATAGATAAAGACAACTAACCAAAACATTACTCGTGTATCGAGTAATGTTTTTTTGTTATAATGAGATGAGTGAGACAAAAGATTTTCCAGAAATTTTTGTGTTTTTTGAACTGGTTTCTTTTCAAAAAAGTAAGAAGGATGTGGCGATAATGAAAAAAATAATTGGGTTAAGTATGGTTGGTTTAACTTTGCTTCTTGCTTCATGCGGTAAAAATGAGCAAACTACTTCAAGTGAAACTTCACAGTCAATGGTTCAAACAAGTGAAACAACAGCAATGACTACTTCTGAAACGACAACACGCGATTCAAAAACGACAACAGGTGTCAAAGAAGCGAACACAACTGTGACGACAACACAAGCAAGTTCAACAGATCAAAACACAAAGACATCAGCAACCACGGTTCCAGATTCAACAACAAACGTATCGAGCGAACCTGCGTTTACACCAGAACAAAAGCAAGCGCTAGATGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 209438-210530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWI010000002.1 Enterococcus sp. MSG2901 scaffold1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 209438 36 100.0 30 .................................... TGGAGGAATAGGCGGTTTGACTACAGCGCT 209504 36 100.0 30 .................................... AATGCAATCTTTATTTGACGCTTATCGTTC 209570 36 100.0 30 .................................... TTTGACGGAATTTGCCAAAGTATCGCCTAC 209636 36 100.0 30 .................................... AAGAGATGCCAAAAACTTTAGCATCTTTTC 209702 36 100.0 30 .................................... TAAACTTCATGCGGTTATTACAGGAAAACC 209768 36 100.0 30 .................................... ATATTCACACGCAGTGGGACATGAAGTCAT 209834 36 100.0 30 .................................... TGATAAAAATCAACTTGAACCTGTCGGATA 209900 36 100.0 30 .................................... TAACAAGCTCATCATCAAGCATTACTGTTT 209966 36 100.0 30 .................................... GCAATCTCAACGACAGAATATGCACTGTTT 210032 36 100.0 30 .................................... GTCGTGGAGTGTAGCAAGCGCTATGAGAGG 210098 36 100.0 30 .................................... TTTTGGGTAATCAAATAACCACAAACAAGG 210164 36 100.0 30 .................................... AAGAAAGTCTATTGTTAAAGTAAATCTTAA 210230 36 100.0 30 .................................... CCATCTAATCAACAAAGAGCTGCTGACGTA 210296 36 100.0 31 .................................... GAAATACATTCAAAGAAGAACGGTTTTAGTG 210363 36 100.0 30 .................................... TAAAGATGTTTCTACTTTTAATGTGACTTT 210429 36 100.0 30 .................................... ACACGACTATCAAGAAAGAAATTTCGGTCA 210495 36 88.9 0 .........................T.....CC..T | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 99.3 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TCGAGACATATACTTCTTTTTACTGTGAGTGTGACTAAAACCAACAACACTGACGAAAAAGAAAAGTGTTGCAACGGGTCGACCAAACCAGTCTAGCCAATCAGGCGCTCCAAATGGAACAAACATTTGATGAATATGATCAATGAACATTAAAATGATTCCTATCATTTTTAGGTCAAAGGTTGATAAACCTTTCCTAGGTGTGTCAATTGTCAAAATAATTCCTCCTAACTAATATCGACTGTATTTTAACAATCGAATTTCATTAGAAGCAATTGAAGCAACTTGTCAGGAACGAACAATTTTGTCATAAAAGATTTTTTGCATACATCATCGATGGAGAGTAAATAAATATTAAGTGGTAGTTGGGGTAGTAAATTCATGATATACTGGAAAAAAGATCTTTGAAATCTAAATAAATATCGAGAAGAAGCATCCAAACTGAAGCCTTGCTATGGGTGAATAGTGCGATTACGGAACCTCAAAAATTTTTATCCGAG # Right flank : TAATAATAGCTGTGTTTATCAATCGTATCGAACTGAGCCATTTGAAGGAAACGAGTTTGCAGTAACTAGCCATATTCGTCAGAAAAATAGCAAATAATTTTTTGATACTGATTCCAACAAAAAAACCACCAACTAGTTGGTGGTTTTTTTATTGGGTAAATATTTGGGAATAACAAACATGAGAAAATATCATACTAATAAATTAAGTTGGAAGATAGGGATAATTTATTAGTATAGATATTATTATAACGTATTTAAAACACGTTTATGATTTGTTTTTTTTATAGTTGTTATTATCTTTTTTACCTAAATCAGGTTGCCTGAAATTGGCTATTGTAAAGTGAACGATAGAGTGTTGGACGTTTCAACAGTTGTTTATGTGTTCCTGTTTCAATGATATCGCCCTTATCCATTACTAAAATTAAATCAGCATTTTCAATGGTGGAGAGGCGGTGGGCAATGACGAAACTTGTGCGATTTTTTGTTAATGAGTTCATTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 247771-247206 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWI010000002.1 Enterococcus sp. MSG2901 scaffold1.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 247770 36 100.0 30 .................................... TGGTGCAATAACTGCTTTATCGGCAGTATT 247704 36 100.0 30 .................................... AGGGAAACCAAACACAGCAACAGTTTTCCT 247638 36 100.0 30 .................................... CATAATTATCATGTTCAACAAGTTGCAACT 247572 36 100.0 30 .................................... GTGCAAAACAATCACCCAGCTTCTCGATGG 247506 36 100.0 30 .................................... CATTGCTACGGACTGTAACGGTCAGTTAGA 247440 36 100.0 30 .................................... AACTACTTACAAACCTTTTTGATATACTTT 247374 36 100.0 30 .................................... AGAACCCCAGTTACATTCTGGGGGGCATTA 247308 36 100.0 30 .................................... TCCGAGCGTAGCAAGTGAAGCCCCTGTTTT 247242 36 88.9 0 ..........................T..GGT.... | T [247210] ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.8 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : CGATTTATGGATGAAACTGGGCAAGTAATTGATGAGTACCGCATTGAATTTATTCAAGATCACTTAGCTTATCTTTGGAAAGCAATTAATGACGGCTGCAACATCAAGGGGTATCATCTATGGACGTTCATTGACTGTTGGTCATGGATCAATTCCTACAAAAATCGTTACGGATTAGTTTCCTTAGATTTACCTACCCAAAAAAGAACAATCAAAAAAAGTGGTGAATTTTATAAAAAACTAAGTGACGAAAATGGATTTGATTACGATCTTGATTTGCTGGTTCCTTAAAAAATTATGTATCTGTAGCTTCGACTCATTTAGCAACTAAAAAAAACTGGTTATGACAGAAAGTCAGCTTATGCTATACTAAAGAAAACTGTTCGTTGACATTCAAATAGCCAACAAATTATACCAAATAAGTATAAAGATGCATTCAAACTGGAGCCTTGCTATGGGCGAGTAGTGCGATTACGGAACCTCAAAAATTTTAATCCGAG # Right flank : ATAACAAAAAAAGGACCGCTTGTTGAGAGCTGGTCCTTTTTTTGTTAGATTTTTTGCTCAACATCAGTAACAGTTATTTGCAACACACGGCTTAAAAAAGGAAACTTTTCCTTCATTTCATCAAAAATTGGCCCTTCTTTGATAAAATCAGCAGTTCCGTGTAAGTGGAATCCTGCACCAAGCCCTACTGTACCGATGACTTCTTTGCTTCCAACCGTTAGCATCACTTGATTATTTTTTTCGATATCCTGTTGGACACTGTGCATCCCAGCCGCAGGGATATATAATTTATCATCACTGATTTGAACGTAGCTGTTCCAAGTGTTTACTGCATGAAATCCCGGAGTTTCTTCACTCGAAGAAATTATTGTCACTGCTCCCTCATGCTTCATTACTTCTAAAAATGTTTCATTCATCATTTTATAGACCTCATTTCAATTATCGTAAGTTTATTATAGCACCACTTAGATATTTGGTTCAGTTTTTAGTAATAAACAACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 97603-96709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFLWI010000016.1 Enterococcus sp. MSG2901 scaffold1.16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 97602 36 100.0 30 .................................... GCCTCTTGCAATCGACACGATATCGTTGTT 97536 36 100.0 30 .................................... AAATAGATGGTCAATATAGATAGACGTATA 97470 36 100.0 30 .................................... CTCCCTCGTCGTTTTAATTTAAGCTTCGAT 97404 36 100.0 30 .................................... CTTTTTACAATCGTATGAACGGGGAGTTAA 97338 36 100.0 30 .................................... AGCTATTCTAAGACGTTATAATGTTAGATA 97272 36 100.0 30 .................................... TTTACTCACGTCAATTTCAACACGTACAGA 97206 36 100.0 30 .................................... GAAATGTTGTAAAGAAAAATTTAGGGAAGT 97140 36 100.0 30 .................................... TTCATACCAGTTCACAGTCTCTTTTAGATT 97074 36 100.0 30 .................................... AGAGAAATGAAAGCCAATAATAAATGGTCG 97008 36 100.0 30 .................................... TGGTTGTCCGCAAGTGATTGTTCCAAGAAT 96942 36 100.0 30 .................................... CGATATTGTGTCGATTGCAAGAAGTTGGCT 96876 36 100.0 30 .................................... CAAGCGATTGTGAATGTAGCGAGCACGTGG 96810 36 97.2 30 ..............................T..... GTGCAAAACAATCACCCTGCGTCAAGATGG 96744 36 83.3 0 .........................AGA.A....GA | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.6 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : AGAAATCAAAACGAAAATTGATCATTTGTCGATGGAGATTGCTAAAGTGATGCAACACGAATTGTTAGAACATGCGCTAGATCTTGAAGAAGATGAGTTGACCCTCATGGAGATATTTAAGTGTCTAGGAATACGGATTGAAACAAAAAGTGATACCATTTTAGAAAAAATGATTGAAGTAATCCAAGTATATCGTTACCTAGTGAAAAAGAAGTTATTGGTATTTGTGAATGCTTGTTCCTATTTAACAACGTCAGAATTACAAACATTATTTGACCATATTTCTTTATACAATGTGGATGTATTGTTTTTGGAACCTCGACCAGTTGAGGGTGCTTCTCAACAAATTCTAGACCAAGATTATTTTTTGATAACAAGATAACAAGCATCACTCATCTTTTCGTTCTTTGACAAGTAAATCAAACTAATGAAGCATTCATGCTGAAGCCTTGCTATGGGCGAATAGTGCGATTACGGAACCTCAAAAATTTTTATCCGAG # Right flank : TTATTTTTCCTGTTGTAGGTTGAAAATATGCTTGATTTAGTATTGATAGCAGGTGTATTGCTCTCAGTAATATTTCTTTCATGATGAAAAGGTCTACCAAGCTTTCTAAAACAAATGGGATTCCTTCGTGAGTTTGATAGGATGCTCCTCTCCACTATATACATAATGTTCACCGAGAATAGACAAAAGTACGATGTCACTGGCAAATACTTGATATAATCAGAGAAGTAACGAGTACAGATTCAAAATAGGGCGACTTGAGACTTTTAAATAAACTTCATTTGTTGTTTGAGTTGCGGGTTGATCGTTTCTAGCGTAAAGTTTGCTCTTGTGATTGTATTTCTGATTTTTACGATAATAATATTAGGGACAGTTTTATAAAATTAATACAAAAAATCCTACAAATACAGTGTTTTTTACTGTGATTGCAGGATTTTTTTTGCTTATTATAAAATGAAAAATCGAAGAGCTGCTAAAGAGATCATCCCTACGATGACAAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //