Array 1 3168-1325 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAX01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy06 Contig_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3167 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3106 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3045 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 2984 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 2923 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 2862 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 2801 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 2739 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 2678 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 2617 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 2556 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 2495 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 2434 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 2373 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 2312 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2251 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2190 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2129 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2068 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2006 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1903 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1842 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1781 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1720 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1659 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1598 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1537 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1476 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1415 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1354 29 96.6 0 A............................ | A [1327] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20211-19268 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAX01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy06 Contig_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20210 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 20149 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 20088 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 20027 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 19966 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 19905 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 19844 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 19783 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 19722 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 19661 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 19600 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 19539 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 19478 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 19417 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 19356 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 19295 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //