Array 1 455192-456684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKN010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5735 .24042_7_359.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455192 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455253 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455314 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455375 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455436 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455497 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455558 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455619 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455680 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455741 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 455802 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 455863 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 455924 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 455985 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456046 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456107 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456169 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456230 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456291 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456352 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456413 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456474 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456535 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456596 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456657 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472816-474780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBKN010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain 5735 .24042_7_359.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 472816 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472877 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 472938 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 472999 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473060 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473121 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 473182 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473244 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 473305 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473366 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473427 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473488 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473549 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473610 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473671 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473732 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473793 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 473854 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473915 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473976 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 474037 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474099 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 474202 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474263 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474324 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474385 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474446 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474507 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474568 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474629 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474690 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474751 29 96.6 0 A............................ | A [474777] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //