Array 1 200365-200982 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS995364.1 Francisella tularensis subsp. novicida FTG FTG_scaffold2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 200365 36 100.0 29 .................................... TTTTTGTGTATGTAATGTAGCTTTCTTTA 200430 36 100.0 28 .................................... ATGGTTGTCTAGGTAGTGTAAATTCCAT 200494 36 100.0 29 .................................... AAGCAGCTGCTTATGTTTTGACAATCAAA 200559 36 100.0 28 .................................... TCAATAAAAAATGCCCATTGACTAACGG 200623 36 100.0 30 .................................... ATATTGTTTTAAATCGTCGCTATCAGCAAA 200689 36 100.0 27 .................................... CAAATATAGCTAACTTTTGGAACTCAG 200752 36 100.0 29 .................................... TCTATTATGTTTCCTGAAAGAGTAGTTTT 200817 36 100.0 28 .................................... GCCACAAATACTACAAAAAATAACTTAA 200881 36 100.0 27 .................................... CTAGGCTTGGAATATCTGTCAGAGATA 200944 35 88.9 0 .........................-.A..A.T... | GC,TG [200966,200969] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.9 28 GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Left flank : GAATATGTAAGAGAATTTTATCGTGCCTTTATGCGAGGCAAAGAAATTGCAGAGTATCCAATATTTTGTTATGAAACTAGGAGGGTGTATGTTGATAGTCAGTTATGATTTTAGTAATAATAAAGTACGTGCAAAGTTTGCCAAATTTCTAGAAAGTTATGGTGTACGTCTACAATATTCGGTATTTGAGCTCAAATATAGCAAGAGAATGTTAGACTTGATTTTAGCTGAGATAGAAAATAACTATGTACCACTATTTACAAATGCTGATAGTGTTTTAATCTTTAATGCTCCAGATAAGGATGTGATAAAATATGGTTATGCTATTCATAGAGAACAAGAGGTTGTTTTTATAGACTAAAAATTGCAAACCTTAGTCTTTATGTTAAAATAACCACTAAGTTCTTAGAGATATTTAAAAATATGACTGTTGTTATATATCAAAATGCTAAAAAAATCATAGATTTTAGGTCTTTTTTTGCTGATTTAGGCAAAAACGG # Right flank : TTTCTAAATTAGAATTTGCTAATATAACACTACTTGAGAATTTATTGGCTTATAAAAATGGATTTAATGCAGATGAAAGATAATGCTAGTAAAGCTTCTTCATTATTAAAAGCAATATCCCATGAGTCGAGATTATTGATATTATGCTTGCTACTCCGAAGAGAGATGACAGTAGGAGAGCTAGCAGAGTACTCTAGTTTGAGCCAATCGGCATTTTCTCAGCATTTATCAGTGTTGAGAAATAATGGTCTGGTCAAATGTAGGAAAGAGGCGCAAAATGTATATTACAGTATCAACGATCCTTCGGTAACAAAAATATTGGAGGCTTTGTACAGCATCTATTGCGGTGATAAATAATTAAAAAATTTAAAGTTTATATTAGTAAAATCTAAATTAGATAAAGTTAAAATAAGGAGACTAAGATGAATAAAGTAGAAAAAATATCAGTAAAGCAATTTCTTGACCTACAAAAAAAAGAGAAGGTCAAGCTAATAGATATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 411478-409564 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS995363.1 Francisella tularensis subsp. novicida FTG FTG_scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 411477 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [411468] 411406 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [411379] 411198 37 94.6 35 ........C...A........................ TTTATTGAGCGACAAGCAGAAAGGGGAAGAAAGAG 411126 37 97.3 35 ............A........................ TCAAACATTTTACCGCTATATTTAGCTTCTATGAT 411054 37 100.0 37 ..................................... CGAATTTTAACATACCAGCATTTATTTTTTCTAATAA 410980 37 97.3 35 ............A........................ TTTATTGAGCGACAAGCAGAAAGGGGAAGAAAGAG 410908 37 97.3 37 ............A........................ ATCTAAGTTTGTTACATGCTTTCTTGTTTTAATTCTT 410834 37 97.3 36 ............A........................ TTGAAATATTTAAAGATAACATTAGGCTAAATACGG 410761 37 100.0 35 ..................................... CAAGCTTTCTTGGGAGACCAGTGGAAATTTCAGGA 410689 37 100.0 35 ..................................... CAAATAAAGCCTCATGATAACGAGATTATTTGGGT 410617 37 100.0 36 ..................................... TAGCAATGATTATACTTTCCGAGTTACCAATTAGAT 410544 37 100.0 36 ..................................... GAAGTTCGTTAAAATTAAGTTGCTTACACATAATCT 410471 37 100.0 34 ..................................... ATTTTAAATAAATGAAGTAAACTAATACTTGCTA 410400 37 100.0 35 ..................................... TGTAGTAAGCAATTATAATAATTTCTTTAGCTTGT 410328 37 100.0 35 ..................................... TTACAAACAGAGTATCACGAACACTTAAATAGAGC 410256 37 100.0 37 ..................................... AAACGATGCTTTAAAGTCTGTTTGAGAGTCTTGCTTA 410182 37 100.0 35 ..................................... ATCTCAAAAGCAGCTCTTTCGCGTGTAATATCGTT 410110 37 100.0 35 ..................................... GTAGTAATTATGAAGTCATCTTAGAGAGTGCTTTA 410038 37 100.0 38 ..................................... TTTATTTGATACGTATTAGTAGCCGCGTCAAGAATACT 409963 37 100.0 36 ..................................... TAGTACATAGTACCCAAGAACCGACGAAGTTTCTTA 409890 37 100.0 36 ..................................... CTATCTAAGAGAACTTACAAGACAAGAGAAAATACT 409817 37 100.0 36 ..................................... TTATTCTACAGAAGTAGACTATACAAATTTGCATTA 409744 37 100.0 34 ..................................... ATGCTTATGCGAGTAATCCTAGCTGGTATATTGA 409673 37 100.0 36 ..................................... TAGAGATGAAATTCAAAGGGTAACAAGTCAAACTTT 409600 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 25 37 97.6 41 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AACGACAATGAACACATTTGAGATTACAACGTCTAGTTGTTTCCCATGCCATCCATTTAAGTTGATGTTTCACTAAATTCTTAATCCAAAACGAAATATAATTTTGCTATAACTATTATAACAAATAATCATTAAACTAACTGTATAAAACTAATAAAAATAACTTTAAAAAAGATATTTTAAAGACCCTTTTAGCTTGGTTAGTTTGAGATTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTGTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAAATGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATCAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : AGCCAAAACAAACCTAGTGTTTGCAAGGTTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAGCAAAAATTTGCCACCTAAGTGGCTTTTTTTGTTTGGCAATTAATATATCTTGTTCGCTTCTTAGCTCGATTACATCAAGATGGTTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCACCTTCAGTGGCAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTGTAATATTCACATTGTATACATTGATGATCCGTTGCAGATGAATCTGGCTTATTACCACTATCTAAAGTACTAAGAATATCGCTGATAGTTTTTATAAGTTTGTTGATTAACTCATCAGT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: R [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //