Array 1 259-23 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCG010000004.1 [Clostridium] scindens strain GGCC_0168 NODE_4_length_194638_cov_555.793368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 258 33 100.0 36 ................................. TTGAGTTCCTTCTGCACATCTTCAAGGTAACACATC 189 33 100.0 34 ................................. ACTGTTACAGTATACGGACAGGGACAGGTATTTT 122 33 100.0 34 ................................. GCCATTGCTTCAATTGCCGGAATATTTCCAAATT 55 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 100.0 35 GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Left flank : CGCCATTCTTATGGAAGTAGGTGATAGAATGCTGGTGTTAATAACTTATGATGTGAATACAGAGACAGAGGCAGGAAAGAGACGTCTAAGGAAAGTAGCAAAGCAATGCGTTAATTATGGACAGCGGGTTCAAAATTCCGTGTTCGAGTGCAATCTGGACGCCGCAAAACTTCGCCAGGTAAAGGCTATCTTGGAAGACATAATTGATAAAGAGGTTGATAGTTTAAGATTTTATAATCTAGGTAATAAGTATAAAGACAAGATTGAACATATAGGAGCAAAGAAAAGTTTTGATGTGACTGCCCCTCTTATATTCTAGAGTGGTTTAGTGCGAATGTGAAGTGCACATGAAAATGCAGGGAGATTCGCACCTGGATATTGATGATATGAGGGCTAGGGAAGTTATAATTTGTTGTGTAGGTGTTGGAAAAAGTTCTTTTGTTTGGCGTTTTGCATAAGAGGATTGGCTGTATATTAGGAGTTTTATGTGCAAAATTGCT # Right flank : TACTGTTACAGTATACGGACAGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 65178-61913 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCG010000020.1 [Clostridium] scindens strain GGCC_0168 NODE_20_length_65199_cov_555.340292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 65177 33 100.0 36 ................................. AGATGCTCTTAATGTGCCATCTCCTGTTACGATATC 65108 33 100.0 34 ................................. TCCTGTATCTTGTAATTTCCCGGCGCAAGGTACT 65041 33 100.0 34 ................................. AAATTTGATTTGGTTTTATACGCAGAGAGGAGCG 64974 33 100.0 35 ................................. GCTCTGTCAACTGTCATTCCCCGGTTATCCCACAT 64906 33 100.0 36 ................................. TGCGTCTCGAATCTCCCGAACCGTTGCTTCGGCCGG 64837 33 100.0 34 ................................. CCAGTTCTTCGGGTAGTATATGTGGTTCATAACC 64770 33 100.0 35 ................................. AGTTCACCAGTTTTTCCGCAATTGCCTGGATCACA 64702 33 100.0 34 ................................. CTCATTGCACCATTCAAGAACTCTTCCAGCCAAA 64635 33 100.0 34 ................................. AAGAAACAAGGTGCGATATGAAAAAGGCAGTATT 64568 33 100.0 35 ................................. TCGAAGGAAATAGTCAAGAAATCGGCAATCCTTAC 64500 33 100.0 34 ................................. TACCAGCGCCTGGATACCGGAAGATGGGAAGAAC 64433 33 100.0 34 ................................. GATGTCGGAGGAAATGCAGTTACAGTTCGATATG 64366 33 100.0 34 ................................. TCTCAAAGATATTTTAAAATAACCTTGACAAACA 64299 33 100.0 35 ................................. AAAACAAAGAACACACAACGAATTAGAAAGGAGTA 64231 33 100.0 33 ................................. ATATTCTACGCCTGTTGGAACACAGTTGGAAAA 64165 33 100.0 34 ................................. GCTCTACCGGCGCACCGCACCCCGGACAAAACTT 64098 33 100.0 34 ................................. ATATGATTTGGCTAAATTTGTATGCCAAGATGCC 64031 33 100.0 33 ................................. ATTATGAAGATACTATTAGATAAGATTATGACC 63965 33 100.0 35 ................................. GCATCAACGATGGTTGCTTTGTTACCTACGACAGC 63897 33 100.0 33 ................................. GTTGCTATCTTCTCCAACGTCTCCCAGTCAGAT 63831 33 100.0 34 ................................. ACGAAGGAGTCTGTAAAATACTCGATCACGCTTA 63764 33 100.0 33 ................................. TTCATCGTAGTATCTTCCATCTGTCAGCCTTGT 63698 33 100.0 36 ................................. TCCTAGTTCCTCTTCCGTAGAAACCGCAAACATGAT 63629 33 100.0 33 ................................. GCAAAAATGAGCGAAATAGATCCCATCCTCTTT 63563 33 100.0 34 ................................. ATCCATGCAAGCCGGATATCTTTGAAAAGACCTA 63496 33 100.0 35 ................................. GAATCACCAATTTTGACATCGAGAAACGCCCATAC 63428 33 100.0 33 ................................. TTATTGGAAACAAACTCCATAATTGTTTCATTC 63362 33 100.0 34 ................................. CTTTCTACTCTTTTTCGATGACGTTCTCCAAACA 63295 33 100.0 34 ................................. CTCTGCCACTCCCTCCTTCTTATCCTATCGCATT 63228 33 100.0 33 ................................. ACACCTCCATCCTATCCTGTTCCAGTCCGTTTT 63162 33 100.0 34 ................................. GTTGCTGACGATGAAGTAATAGATGAAAGCGAGC 63095 33 100.0 34 ................................. ACATTTCGATTCTCATAGTATCGGAGATAGTAGT 63028 33 100.0 33 ................................. GGAATTAATAGTTCTACGGCAAATTTGTTGGCC 62962 33 100.0 35 ................................. ACAATCTTCGTAACCATCAACTCCGGCTTGCCAGT 62894 33 100.0 33 ................................. ATTTATAGGCTCCTGCTAGAGCCAACTATAAAA 62828 33 100.0 36 ................................. TGAAACTTTATAATTAAAACAAAAGAATAGGTGGAG 62759 33 100.0 34 ................................. GACCGCATAAGCGAACGCACATACAGCAACTGCA 62692 33 100.0 36 ................................. GACGCTCAAGCATATTGCCGTATACGCGCTTGTACC 62623 33 100.0 34 ................................. GACTGTTTCAGAGGAGGGCAGAAGAAAACAGAAA 62556 33 100.0 33 ................................. GACATCCTTAAGTCTCAACTGGCTGAAAAGATG 62490 33 100.0 37 ................................. GCTATCTGCTCATCCGTCAGTCCATCTCTGGCCCATC 62420 33 100.0 34 ................................. AGTAGAGCCCGCTCCCGAACTAAGTATTGGAGAA 62353 33 100.0 35 ................................. GCTGTATGAGTGCTTGTGGTGACGAATTAAATGTC 62285 33 100.0 35 ................................. GCAGGATGATAGTCTTGCCGCCGGAACCCATACAG 62217 33 100.0 34 ................................. GTCTCCTCTGCCTTGCGCTTCTCTTCCATTCTTG 62150 33 100.0 35 ................................. TTAACATCAACTCCGAACTGCCGGAGAATAGCATC 62082 33 100.0 35 ................................. ATATCTGCTGACATAGCCATACTTATTTCTTACCT 62014 33 100.0 36 ................................. TCCATCTTAATTTCTGTAACTTCATACGTAAGTTCG 61945 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 49 33 100.0 34 GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Left flank : TACGGACAGGGACAGGTATTT # Right flank : AAAGAGTAGAGAGGGGCGTTTTGGTATGAAAATAGAAATAGGCAAAGAATTTCCACAGTATTTTAAGCCCTCATATCCAGAGGAATTTAAATTATTTTCACACTTTGAAACGACAGCAGGAATACCAACTGTTTTGTTTGCAATCACGACTTGGAAAGAGAATGGTAAGCCGAATGTGTGCTTTCATTCGTGGAGCTGCTTTCACGGAGATAAAACCGCTTTCTTTGCCGTGATGGGGAACTTATATCAGCATACCCACACCTATGCCAATATCCAAAGAGAAAAATGCTTTTGTATTAACTTCCTTCCGATAAGTTTCTACGACAAGCTGGTAAACACCATTCGCCAAAATGAAATGGACGATGACGAATTTGCGGCAGGAGGGTTTACAGCTTCTTATGCCAAAACAATTCACGCCCCTGTAATCAATGAGGCGTTTCTTAGTATGGAATGTACCCTGAAAGAAGTACAGGATTTAAGCGGTGCGGGAATTACAGCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 6663-5350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFCG010000006.1 [Clostridium] scindens strain GGCC_0168 NODE_6_length_175636_cov_511.779982, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 6662 33 100.0 33 ................................. TCTTCTGCTTCTACCTCTGGAATACCTGCAACA 6596 33 100.0 35 ................................. AGTTCATCAGTTTTTCCGCAATTGCCTGGATCACA 6528 33 100.0 35 ................................. GTCATGGCTTATCCTCTCTGTACAGAGCCGCATTC 6460 33 100.0 34 ................................. GTAATTAGATCTGCGTATACTCGTGCAAAATAAG 6393 33 100.0 34 ................................. CTTTCATATGATCCAGACCGCCCTTTTTTCCATC 6326 33 100.0 34 ................................. GTAAAGCAGAAGTGATAGTCCATTGCCTTTCACG 6259 33 100.0 34 ................................. GCTTAGGCTCTGGGTTTGGGTTAGCCTTTGTTGC 6192 33 100.0 35 ................................. TGTATGGAGCATCAGAAGACATCACCACCGACAGG 6124 33 100.0 33 ................................. TTTCCATCTTCTGGGATTCCGGCACCAGTAAAA 6058 33 100.0 35 ................................. ATCTGTCAGCTGATCATAATGATAACTTCCATAAT 5990 33 100.0 36 ................................. ATCCTTATCTTCTGTTGTTGCAGTGCCGGTATCATC 5921 33 100.0 33 ................................. TAGCGATATTCTCATAGGTAAAGATCGTCATTT 5855 33 100.0 34 ................................. TGCTTCTACAGTAATGCCACATAATAGGAGAACC 5788 33 100.0 36 ................................. AATTCCTTATATTCTTCTGAATGATACTTTTCTATA 5719 33 100.0 35 ................................. ATCTGAAAGCACCGTTAAAGATGAATGGGACATGG 5651 33 100.0 33 ................................. AGTTTTGAATTATACTCTTTAGCAATATTAATC 5585 33 100.0 35 ................................. GAGATGTCGGTAGACGATGTGGAACTTGAGGTAGG 5517 33 100.0 34 ................................. ATCATAGGGATGTTCCGATCGGGCCAGGCACTTT 5450 33 100.0 35 ................................. CTTTCTTGGTTGTGTACCCTTCGTGGTCTCCTTTC 5382 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 100.0 34 GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Left flank : CAAGTTAGGTCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATCACAAGTTATTTTGACGCAGGGGCAGTATGCCTCTGCGTCTTTTGAATATTGTTAGAAAGATTTTCTTACTATAGCCAACAAGAATTAAGGGTGGTGGAATAGTATGTCTAAAGGAGTTCGAGACGGCAGTCCTTCTTATCATTAAAACTTTATGAAAAAGCTAATTGAGAAATTAGAAATATAAAAAAAGAATAAATTTCTTTGAAAATTAGATATCGATTCAGTAGTGCGAATGTGAAGCGTACATAAAAATCCCAGGATATTCGCACCAAAAAAGTTGCACAAAAATAGTGTATTGTATTACAATATAGATTAGATGAGAGAATGTATCTAAAGGTAACTGTAATATAGCACAAAAATTTTGCAGTTATATATTAAAAATTGGATAAGTTTGCT # Right flank : ATAACATTCACTAAAATTGAATAGTTTACAATTCACACTGGGGACAGGACTACGAAACATATTTTAAGAAAGTTTATATAAAATTACCGAGTCCGGGTACTGAATGATACACGCATGTATACAGGCAATGAAAAAAATAACAAAAATTATTACACATATTGTTATAGAATTTGTAGATGAATAGTAAAAAAGTGAGTGGTAGGAAAATCTGCCACTCATTTTTTAAAAAAATTGAAGGTTCAACTCAGTATGTGATTGTTAATTGATATAGATAATACCTATAAATTCATATAATATATCGAAAGCATTGATTTCACAGCAATTCAATGGCATGGTATCATATACGCATGTGGAAAAGTCATACGAACATTATGAGAGGTTGTTATGAAGAGAGAACGAAAACTTGTATTATTATCGCATTGCATCTTAAACGTAAATGCTAAGGTGGAAGGAATTGCTACTTCAAAATCTGGTATTACAGAACTTGTTACGAGTCTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA //