Array 1 56965-59573 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVTB01000002.1 Streptococcus anginosus strain OUP12 oup12.s2-trimmed-pair1.paired_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 56965 36 100.0 30 .................................... AGCAAAAAATCAAAGGCTACAAGTCGGATA 57031 36 100.0 30 .................................... ATTGCTCATTGCAGCTCTCCTTTTAGACCA 57097 36 100.0 30 .................................... GTACTAGACTGAGCACCAGAGCGCACAACA 57163 36 100.0 30 .................................... TCTAGTTTCCCTGATTCTAGCCCGCTGTTA 57229 36 100.0 29 .................................... CATCGATTTGTAATGGGCTAGGCTGTTTG 57294 36 100.0 30 .................................... CCAACATCACAAACTTGGAAGGCTCTGTGA 57360 36 100.0 30 .................................... AAAACTCGTTGACGGCCGCATTATCAAAGG 57426 36 100.0 30 .................................... CGTACCTCGCAAAAGAAAGAAGGTATATTA 57492 36 100.0 30 .................................... GAAATTGTCCGTTCAGGGGACGATTTATTA 57558 36 100.0 30 .................................... TTTTGATTAAATTATAACACAAAAAACCAC 57624 36 100.0 30 .................................... AGCAAAATTGTTACACGCAACCTGTCTTGT 57690 36 100.0 30 .................................... AAGATTGATACACGTCTTTCAGAGCTTGAA 57756 36 100.0 30 .................................... TTCCATTGCATGAGGCCAGCTCTGCCATTG 57822 36 100.0 30 .................................... CGTAAGCCATGATTCCCCTTTCTATCCAAG 57888 36 100.0 30 .................................... TAAATTAAGTTATAATAAATATAAAGTAAA 57954 36 100.0 31 .................................... AATAAATATGAACATCATCTATAATAAATGG 58021 36 100.0 30 .................................... TACGGAGGATATAAACTCTTTATATCTTCC 58087 36 100.0 30 .................................... AGTCAATCAAGACAAAAATAACCAAGCAGA 58153 36 100.0 30 .................................... AAAATAAATGGGGAACAGTCGGCAGTGCCT 58219 36 100.0 30 .................................... AAAATGAGATTAAGCGAATCAACGCTGTTG 58285 36 100.0 30 .................................... CGTTTATCATAGACATTTCAGGCGTCCATG 58351 36 100.0 30 .................................... AAGCAGCAACCAAACTATCAAAAGCGCCTT 58417 36 100.0 30 .................................... GTGCATACATCAACGAAGCCTCTTTGGCAA 58483 36 100.0 30 .................................... TTTTGGTACGATTGGTACACATTGGTACGG 58549 36 100.0 30 .................................... AGAAGGCTTTTATGATGTTTATGTCACTTA 58615 36 100.0 30 .................................... AAGACAGATGACGGTAACTCTCTTGCTTCT 58681 36 100.0 30 .................................... CACAGTTGCAGAATTTGCTTGGTGATAAAT 58747 36 100.0 30 .................................... TAAGTCTTTGTTCATCTGCTCACCTAATCT 58813 36 100.0 30 .................................... TAGAGAAGACTGCGCCAATTCAATTAAAGG 58879 36 100.0 30 .................................... GCTGATTAGTGATACGATAACAAAAATTAA 58945 36 100.0 30 .................................... ATATGGTTAACCACATGTCCGCAGAAGCCG 59011 36 100.0 30 .................................... AAAAAGCCAAAAATCCAGCAATGCCGCTAA 59077 36 100.0 30 .................................... CATATAATAGTCTCGTAAGATAAAGAAAGG 59143 36 100.0 30 .................................... TCAACAAGGTTTTATTAGTTATGTAAAAAT 59209 36 100.0 30 .................................... AAGCAGTACCTTGATTGTTCCAATTAGCAC 59275 36 100.0 30 .................................... GCACTTATCATCTGCAAGTGAATACTTATC 59341 36 100.0 29 .................................... TTATGGCAAAGCGTATGAGTACATTTATG 59406 36 100.0 30 .................................... GTGGTGCTTTGTTTATGATTACAGCTCAGG 59472 36 100.0 30 .................................... TTATGGCCTCATTTGCGAACACAGGAGCTG 59538 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 40 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : ACGATTACTTAAGTTATTCCTCATTTGTAAAATGTTGTGAGCAATTACAGAGAATGGCCGACAATTACAGTAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTAGTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATAGTAACCTTGAAAATTATGAACAGTTTATACCATTATAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : CTACATTAGGAATTGTTTGATGTAAAAGAATTGTAATCTAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGCTGAAATGGTTTATAATGAAAAGTAGCAAGTATATTAGGAGGCCGTCTAATGGAGAGAAAAATTAAAAAATCAGTAGTTGCGACCGGTTTAGCTGCAACCACTATTATTTCAGGCAGTTTATCACATCAAGTAAATGCCGAAGAAGTAAAAACACAATCTACTGAGCCAAAGACATCTGAAAAAATCACCAAACCAGTTACAGAAACAGATGTTCAATCAGCAAAGATGCAAGCCGATGCTGCAAAGGTTCAGACAGATGCTCAGCAAAAAGTTGTAGAGCAAGTTAAAGGGGATGTAAATACTTCAAAGGACGCGGTAGCAGATAGCGAAAAAGCTGTTGCAAATGCTGAGGCAGAAAAGAAAGAAGCAACTCCAGAAGTTATTGAAACCGCAAAAGAAGAAGTGGCGACATCAGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //