Array 1 196241-197782 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYG01000030.1 Campylobacter gracilis RM3268 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 196241 36 100.0 37 .................................... TTTAAACCAATCGCTCCAAAGATAAACTTTATGAACG 196314 36 100.0 37 .................................... CTATAACGGTAAAGCCGGTTTTCATGAATTCCTTAAG 196387 36 100.0 37 .................................... TTTTAAACCAATCGCTCCAAAGATAAACTTTATGAAG 196460 36 100.0 42 .................................... TTTATAGGTCTTAAATTTCGCAATAAAAACCTGCTCCATTGG 196538 36 100.0 40 .................................... AAAACTCCCATTCGCCACCTAACGAGTAAGCGCAGTTGCG 196614 36 100.0 38 .................................... GACTTGGCAAAAACCGCCTTCGGTTACTTCGTTTAAAG 196688 36 100.0 39 .................................... ATTTTTCTCCTTTAAAAAGGACTTTCTTTTTATCTGCAG 196763 36 100.0 40 .................................... ACCGTTCTCGAGTCCGCTCCAATTGGCGAACCACACCTCG 196839 36 100.0 41 .................................... CCAATTCGCCCCAATCCTCGTTAAGGAATAAATCTTGTCGG 196916 36 100.0 37 .................................... ATATTAGCACAAAAATCAGTGTGACCCTCATTTATGG 196989 36 97.2 40 .................T.................. GTCGTGCTCAAACCTCTGTCCTAAATGAACCTGTACCATG 197065 36 100.0 36 .................................... AAGTCTCCTCTTTGCCCGACCTTTCCGACGAGCAAG 197137 36 100.0 42 .................................... CTCACCAAGTATTTCCCATTAATCAACACGGATGGGATATAG 197215 36 97.2 41 ....................A............... ACATGCACCCTAGTTCAGCCTTCTTTCTCATTTTATTCTCG 197292 36 100.0 45 .................................... GATGTCTTGTATCTCTGAAGTTGTTACGTTTCCTAGTACTCTAGG 197373 36 100.0 38 .................................... CAGTTATCTTTACTAGCCTCATTATCCTCACATCTAAA 197447 36 100.0 38 .................................... CAGTTATCTTTACTAGCCTCATTATCCTCACATCTAAA 197521 36 100.0 41 .................................... ACTCTGTCATACACTAGGCTATAGAAGTCTTGTCTTTTAGA 197598 36 100.0 38 .................................... CTCAATTATCTTACCCTCTTTAGTGGTTCCGTAGTCCA 197672 36 100.0 39 .................................... AGGTCATCCTCACTCTCAAATATGATGTTCTTAATCATA 197747 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 21 36 99.7 39 TTTGATTAGAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTTGTATGGCTAAAAGCGAGAGCCTAGGCGAAGGTGAGATCTTTCGTTCCCCTGGCACCTACGTCTAAGTCCCATTTTTAGGGATTTGATTTTCGGACTTTTCTTAAATTTAAAACCCCGAATTTAGCGCACTTTTATATTCTATTAAGCTTTAAAATGTCCGCAAAGCTTAAATTTCGCTCGCGCCAAAAACCCTTTCTCGGACTTCCGCTATTTAGCCTATTTTTAAAGCCCCATTTCTAGGGCTTTTTACGTTTACGAAATTTAGCAGAAATTCGAAAAAGCCTAAAATTTTAATTTTTGCGTTTAGATTTTCGGACTTTTGCGCTTGTGTAAAGACGCTTAAATCCGTACTTTTAAGCCCGCTATAAGTAAAAACCTCGAAATTTGAAATTAATTTTTCGCCTCTTTCTCGGACTTTTTCGCGTTTTGTGATATAATGGCGCTCGCAAATAGTTCTTTAAAAACTCATTGTCAATTTGAATGAGGTTTTTGGGCTG # Right flank : GTTAGCTTGTACGTTAATAAGATAGCCTTTAGAGTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGATTAGAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 24091-24510 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYG01000005.1 Campylobacter gracilis RM3268 contig00044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================================================== ================== 24091 27 82.1 39 G.T.A..T..-................. AGCCTGATAATAACAATACTAAGCCTAATAAACCCGAGT 24157 28 100.0 37 ............................ TTTCTTCGAAAGGAATTTCTCCGCCGGTGCCCCAGGT 24222 28 96.4 37 .....C...................... TCATCGAGCAGCAGCTCTTTCGTATCCCACTTTTGGT 24287 28 96.4 39 .......................A.... TTCTGCCACTGCATTTATAGCGTCCCGTAGAAATGTGGA 24354 27 78.6 100 .T.....TG.-..T....A......... GCCTAAATGGGCTTATTGCACGATTCGCGTAGGAGGTAGAATTTATCTTGTTGAAATCAAAACGGATTTACGCGATACGCCTTTTGCGGCGGAAATGGGT 24481 28 75.0 0 ...........T...ATAA....T...A | T,C [24488,24496] ========== ====== ====== ====== ============================ ==================================================================================================== ================== 6 28 88.1 51 AGAATTCCATCCCGTTGGGAATTGAAAC # Left flank : GTGGACAAGCCGCGCGAGGTCGCACTTGCCGAGCGCGAGGAGGCGGTAAAGAGCGAGCTGAAGAATTATTTCAAGCCCGAATTTATCAATCGCCTGGACGACATCGTGATCTTCAACGCCCTAAACGAGGACGATCTCATCAAAATCGTGGGCATTATGTTTAAGAGTCTGCAAAAAACACTCGCAAACCGCGGCATTAACGCGAGCCTAAGCGAAAATGCCAAAAAGCTCATCGCCTCGGCGGGCTTTGATATCGAATATGGCGCAAGGCCGCTACGCAGGGCACTTTACGATCTAGTGGAGGATAAGATCGCCGATATGATCCTAAGCGACGATATCAAAACCGGCGATCGGATCGAAATCGGCGCGCGTGACGGCGAAATAGAGATAAAGAGGGCAAAGTAAAATTTAGCGGAATTTATCCTGCGGGGTAAATTCTGCGCTTCTGCTAAGTAAATTTGGCGAGATAAATCTAATACTTTATTAATATAAATTGGGCG # Right flank : AAGATTAGTTGTGGCTGGGATAGGATACAATATGGGGCACTTATATGAAATTTCATTCGGTTTCAATTCGCCTACTAAATATGTTAAATTTATGGATTACTAATGAAATTTTGGAGTTACTCACAAATTAAAATTTTAACGAACTGTATATTTGCCGCAATATAAATAGATTTAAATGCAACTTATTTAGTAGCAAATTCCAAAATATTTGTAAAAATGCACGCTAGGGATCTTAAAAGCTAAGTTAAAGTAAGAATTCCGCATTAATTTCAATTAAATTTACGCTACAAATTTAAGATCATGTGCCAAAGTTAGAATTTAAAATTAAATTAGATGATACCAAAGAGGCAGAAAGATGGAAAAATTTTTATAAAGTAAGAATTTGGCAACAACCTTTGAAACTGCAAAACAAAGAATATCGGCGTGCTCGTCATAAAAAGGAAAAATCATCTAAATTTAATGGATACTACTGCCTTTGCTACATAAAGTATAATAATTAA # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATTCCATCCCGTTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 25823-26179 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYG01000005.1 Campylobacter gracilis RM3268 contig00044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 25823 30 86.7 33 T.C.C...T..................... CAATCCGGGCGTTCGTATCGGAAGTGAAAACGG AT [25833] 25888 30 96.7 34 ........T..................... AGCACAAATGGCACGCTAGCGATATAAAAATACC 25952 30 93.3 37 ...T....T..................... TGAGCGACCGCTGCCCGATCGAGGTGAAAAGGGTAGG 26019 30 100.0 35 .............................. CGCTTCGAGTCTGCACGCCGGTGGCCTTTGCTTGG 26084 30 100.0 36 .............................. ACTACTGGAGCGCATTTTAGGGCATATAAGGATATG 26150 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 95.6 35 GTAGAATTCCATCCCGTTGGGAATTGAAAC # Left flank : CGGCGTGCGAGATCTTTTTGCCGTTGTTTTTGGCCTCGACGGCATTGTGCAAAATGTTGAATATATCGCTCGTTTCTAACATATGAAAATTATACAAATTTATTCGTTAATTATACATAAAATCGTATAAAATGAATAAAAATCGTGTTATTCATAAGTAAAAATAGCAAAACGCTTCGTTTATCCGTATGAATTATACAGAATACTGCATAAAATAAACATAAAATTTTATAAAATTTTGCATATTATGCCGTAAAGATGAACCAGCTTGCACAAACAGGCATATTACAGAACGGCACATTAAATTTTAAAACGGGGATAGATGAAATTTTACACATCGAAGCTTTTGGGGTTTGATTTTTTTTGATCGGTTTTGGCAGCAATTACAAACAAGATGTAATTTTACCCTATGCCGAGCCATATCTGCCAGTACAAAGAGCGTTTCAATTCCTAGTGGAATAGAATTCTACGGAAAGGCGGTGAATGCGGGATATGTGAGT # Right flank : TGCTCTATTTAAAATTTCATCTTTTCCTCTTTCATAGTAGCATTCTATAGAATTTATCGAGCCAAATCCTACCCGATAAAAATTTTTACCAAACAAAATTCCGGCTTAGATTTTAAAATTTATCGAGCAAGGTTCTGCGCCTCAGAGCTTAGAATTTTAAATTTAAGAAGCAGCGACTTCAAGCTGCGTGGTTCGAAACACGAGGATTTTAGATTATAAAATTTTGAAAGGTCGGTAGGATTAGAATTTTAAAATTCAAAGTCAATGATCGAAATTCCAAACCGCGCAACTTGAAATTTCAAATCTGAAGCGGAAGCAAATTTTAAGATCGTTCCAAAATTTACCTCTTTTAAATTCACATATCTCAAGCTCTATTCATAAAATTTTACGTATTAATTTACGTAAAATTTAGCTGAAAAACAATGCTAGTATAAGCTTATCCGCATTAAATTTTATCTCTTCTTTTTAGAATAAAAACCGCCACGGACGCGATTATTAGC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAATTCCATCCCGTTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 96694-95497 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYG01000025.1 Campylobacter gracilis RM3268 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 96693 37 100.0 36 ..................................... GCTTTTCTTAGCATCTTTCAGGTACTTTTCTACTGC 96620 37 100.0 40 ..................................... TTTAGGAAATGCGCTGACTCGTCCGCATAGTGTTTCACCG 96543 37 97.3 42 ..............C...................... GCCTATGCTGTAACTGCTATTGCACTCGCCGGCTGAGATCGC 96464 37 97.3 40 ..............C...................... AAGCCTTCCAACCGATTAGAAGCTCGCCAGTTGGGAGACG 96387 37 100.0 40 ..................................... CTTAACATTGAACTTCTCCGGGTCTATCATCATTGCTATT 96310 37 100.0 42 ..................................... CAGCTTGAGTAAGCTTTTTTGCCATAGTTCTCTCCTTTTACG 96231 37 100.0 42 ..................................... CTCAAAAGAACGATATATCTTTTGGCATCTGTCAGCGTCAGA 96152 37 100.0 41 ..................................... TTTTCGGCTAGAGCAATAGGATTTTGCGCATAATTAGGCTG 96074 37 100.0 38 ..................................... AAGCGCACGATTCTCATACGCATTTACACGAACGCCCT 95999 37 100.0 41 ..................................... CTGACCGTCTTTCTTAACTCCGAAGTCTTTGTCTTTGTTAG 95921 37 94.6 41 ..................T.....G............ CTCCACAGTTTTGATCTAAGATTTTTTCTAATCGGTCTAGT 95843 37 97.3 44 ....A................................ GTCTGGCATTTTTTCTCCTTTCTGAAAAAGATTAATTTGTTAAA 95762 37 100.0 38 ..................................... ATCGATAAGCCATATTTACTGCCGCAAAACTCGATTTT 95687 37 100.0 41 ..................................... AAGATATGGTAACTTAGCATAGTAAACTCCTTGAATTAATT G [95658] 95608 37 100.0 38 ..................................... GTTAATCCTATCTTTTAGATTTGCCATTGTATTTTCCT 95533 37 97.3 0 ..................................G.. | ========== ====== ====== ====== ===================================== ============================================ ================== 16 37 99.0 40 ATTTGATTAGAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : | # Right flank : AAACGGGTTTTGCCTCGTATGATGCTGTATGATCACGCTGATTTGATTAAATTTCAAGATATACGACTAAAATTTAATGGATTTTTTAAAAGCACTCCGTAAATTGACAGAATTTGACAACTAAACTCCTTATAATCACGCTCAAAGTTGATATGGCGGGTTTGAATTCTATGAATAATTTTGTTATTTTTCGAAAAAGAATTTTAAAATAAAGGAGAAAGTATGAAAATTTTGTTTAAAGTGTTTTTGCTTGGTTTGATCGGAGTTATGTTTTCTGGTTGTTTTATCGTAATGCCGCCTGATAAAGAAACGGTAATGGCTCAGCAACTAGATGTTTGGTGTATCCTTAGAGAGAATAAGGATAAGGAAAGATATGAGGAATCTAAACGTAAGGCGGAGTCGTTCCTTGATAAAGATAAATATGGAGATAGAGTTCAAATAGCTCCGAGAGGAGAGTATAGCGTTTCGCTATTAGATAGAGCTTTTAGTGGTGACAATCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGATTAGAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //