Array 1 397573-398943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVLF010000001.1 Escherichia coli strain D114 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 397573 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 397634 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 397695 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 397756 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 397817 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 397878 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 397939 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 398000 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 398061 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 398122 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 398183 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 398244 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 398305 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 398366 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 398427 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 398488 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 398549 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 398610 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 398671 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 398732 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 398793 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 398854 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 398915 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 424643-425405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVLF010000001.1 Escherichia coli strain D114 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 424643 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 424704 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 424765 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 424826 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 424887 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 424948 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 425009 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 425070 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 425131 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 425194 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 425255 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 425316 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 425377 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //