Array 1 11151-11916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTH010000048.1 Synechocystis sp. FACHB-908 contig48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 11151 37 100.0 35 ..................................... GATTGTTGTGCCCCTGGCGGTCGCTTTCAATGCCT 11223 37 100.0 37 ..................................... TAATCCTAATTAGGTTTGAGTTAGTATCTAGTGCCAT 11297 37 100.0 33 ..................................... ACAGATTTTGCTTCAGCTAGTACCAAAGGCTAG 11367 37 100.0 37 ..................................... TCGTAACTACCTTCTAAGTCTGTAGCGATGAATGTGG 11441 37 100.0 37 ..................................... CAAAATATAGGGAAGAATTTTAGAAAGAACCTCAGAA 11515 37 100.0 39 ..................................... AACTAAGGCATCCCATAGCATTCCGCTACGATCTATCAG 11591 37 100.0 35 ..................................... TAATAATTGCTGATTAATCGTGGTGGTGGTGGTGG 11663 37 100.0 36 ..................................... GATATATGGCTAAATATTGCTCAAAAGATTTTAATA 11736 37 100.0 35 ..................................... ATTAGATTGGTCGTGTTTTGATTAACGGTGCTAGC 11808 37 100.0 35 ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 11880 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 100.0 36 CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Left flank : AAAATGCTTTATTTGATTATTTATGATGTCCCGGCTACAAAGGCGGGTAATAAACGACGAACTCGTTTGTTTGATCTCTTATCGGGCTATGGCAAATGGCGACAGTTCAGTGTGTTTGAGTGTTTTTTGTCAGTCAAGCAGTTTGCTAAGTTACAAACGGCGATGGAGAAGTTGATTAAACTTGATGAGGATGCAGTTTGTATTTATGTGTTGGATGAAAATACGGTGCAACGCACGATTACCTACGGGACTCCCCAACCAGAAAAACCTGGTAGTATTATTATCTAAGAAGTCATTCTTCAAATTTTGGCATACCTATAGCGAGGGCCTTTTCCCTGGGGGGGTTGCCAAATTGCTTCTGAACCTTGAAAAATCAATACTTTCACGCATTCAGACTGCGTACTATTTTGAAGGTCTGGCTGATTTTGGAAAGATATTCTGGAAGGTTTGCCAAAGTCTGCTTTCCTCCACTTTCCCCGTAAGGGGTCGGAGGGGGCGGT # Right flank : TTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-D [Matched known repeat from this family], // Array 1 10764-7910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTH010000004.1 Synechocystis sp. FACHB-908 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 10763 36 100.0 36 .................................... CTTTAGGTGGGCGTTGACCTTTAGATTAGGAATGGT 10691 36 100.0 36 .................................... AGCGCCACAGCTGACAGAGTTCCTGAAGGAAGCTAA 10619 36 100.0 35 .................................... CTGAGTGATTTTTATCAATTGTCGAGCTTAGTAGT 10548 36 100.0 36 .................................... ACAGGAGTGTTAGCGCACTGCCTGTCATTACTATTA 10476 36 100.0 39 .................................... TTAGATTGCGGGGGCTAGTGACGCCATAGTTTAACGACA 10401 36 100.0 36 .................................... AAAGATATTAGGCTATCCTTCGGGGTAGTCTTTCTT 10329 36 100.0 35 .................................... AAGTGTTGTTGCCTAGTGTTATACCAGAATATCCC 10258 36 100.0 37 .................................... CTCATTAGTGCTATCTTCTTGTTGATGGATTAGAACA 10185 36 100.0 37 .................................... TCTACTCTGGTGAAGACCAAGTGGATTTCGTGGTGAT 10112 36 100.0 36 .................................... GTTAGTGCTTGGTTGTGGTTATGCTGCAACTAAGCC 10040 36 100.0 37 .................................... ATCGATATACTTTTTAGCATCAGCTAAATGATAAAAA 9967 36 100.0 35 .................................... TTAGAAAGTTTTGGTTAGTTTCCATTCCTCTTTTT 9896 36 100.0 36 .................................... TTTCTCCATTGTTAGTTAGTCATTTCCTTGACAATT 9824 36 100.0 36 .................................... TGGGATTCATGAACATGTTGATGGTGAATTATACCT 9752 36 100.0 41 .................................... TGATTAAATTAATATGCGTGATAGATTAACTCATTTTGGTT 9675 36 100.0 35 .................................... TTTTTTGGCATAACTCAGTAAGTCTTTTTTGTTTA 9604 36 100.0 39 .................................... AATACTAATCTTAAAGATCTTGGTTTAATTACATATCGT 9529 36 100.0 37 .................................... AACAATTGCAAGGTTTATAAGTAAATGAACAACAACG 9456 36 100.0 38 .................................... AAATCCAACAACTTCTCCACATTTACTCCACTAGTCTC 9382 36 100.0 40 .................................... CTCCTACTTGTGCAGCCTCTAGTCCGCTTTTTAGATTGCG 9306 36 100.0 39 .................................... GCTTCGCTTCTTTCGCTTTCTCAACATAAAACTCATGAT 9231 36 100.0 35 .................................... CTAAAGTATGGTAACTCTGGGTAATTTTTTAACAG 9160 36 100.0 37 .................................... CTTATCTTTTTCTAGCGTAACAAAAGAATAATCAGGA 9087 36 100.0 40 .................................... TTTCAACCAAAAGCTTATTGGCTTCTACGGACTCACGAGC 9011 36 100.0 39 .................................... TCTGAACTACTTTTTTTTCAACGACTTCACCATGGGAAG 8936 36 100.0 39 .................................... AGTTTTAGATGCACCAATTACATCTTCTTCCATAAAGGA 8861 36 100.0 46 .................................... ATTCAAGACCTCCGGTGGTCAGAAGACTGTAGCAACAAAGCTTGAG 8779 36 100.0 39 .................................... TAGATCAGGCATCCAAACTCTTGGGCGATGTCGCGTAAC 8704 36 100.0 36 .................................... CGATGTAGCTCATAGCGACCTCGATAATTAATTGAT 8632 36 100.0 39 .................................... ACCAAGCTAGTCACTATCCGATCAACCGTCGTTGCAGGT 8557 36 100.0 42 .................................... TATCAAGAGTTGTCTAGTCAGTTCCAAGAAAAACCCTGGGAG 8479 36 100.0 41 .................................... TGACCTGATTCCTCGAGAATTGAGACTCCTAAAGAAATTGC 8402 36 100.0 35 .................................... AGTTCCAGTCGTGCTCCAAGGGCTCTTCGTCTTCA 8331 36 100.0 47 .................................... AACTTTGGAAAATTGCCTTCATACCATTCTTTTGTTAAACCGTTGTT 8248 36 97.2 37 ...........C........................ AGCAACAAAACAGCCAGCAGCAATTAATAAATCAGTT 8175 36 100.0 39 .................................... ACTCCGTGGCGTCGTACCGGTACGCCTGGGCTTCGTCCA 8100 36 100.0 43 .................................... TGAAATAACCCCCATAGCGGTGGCCATGGGGGCGTTTTACTAA 8021 36 100.0 40 .................................... ATATCTGTTAGCTCAATTTGAGCAAGTTCATCATTTTTTA 7945 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 39 36 99.9 38 GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Left flank : TTAATTCGCTAATTGATGTTTCTCTATGTTATTGCCTACGATATTCCTGATGATCGCCGTCGTAAAAAGATGGCCGATTTATTAGAAGGTTATGGCCAAAGGGTGCAATATTCTGTATTTGAATGTACATTGTCTAAGTCTAAGTTTAATGAATTGCAAAAACGTCTCCGCAAAATTTATCAATCAGAGGAAGATAGTTTGCGTTTTTATCCTTTGTCTGGGCATACCCTCACCCAGGTTGATATTTGGGGGGAACCACCACTCACTAAGCCCCCTGGCTCAGTCATTGTCTAAAATCTATGCTGATTATTGGTGTACCATTGCGAGGCTGATGGAAAATCGCTGTAATGTCCGTTTTTCGTTGGGAGCCTCGATGGCTTACTGTATAAGGATTTCAGCCGCTATTTTTGCGTTGAGCTTTTCCGATTATGGTCAATTTTTGCTGAGCCTCGCAAATGAGGATTGGATGCCTTGTCCCGTAAGGCTTTAAAATGGGGGCA # Right flank : TAGCTACGATAACAATTAGTATTACAAAAATATGAATTGAATTAATAATTTAGCCTACGGGAAAATAGGTTTTCTACTGCCATGCTAAAAAATAGATGTTGAGTTAAGTCATCCACCATGCAACTAAAACACTGGCAATCTCAAAAACAGGAGCAAAAAAAGAGTCCAGGGGCTCCCAAAAAAGTGCGGCGACAAAAAGCCCGCCTGCAAGCCCTACGAAAAAAGCTCCATTCTTCCTGGGCTGGAAACCAGCCATAATAATTCGTTCACCAGAACTCGCAATTTTTCACGGAGAAGCCGACAAACATGAATAGTATTTTCACCATTAACCCCTATTGGACCGGAAGCACCTGGGCGTTTGATGCGGCCGAAGTGGGTCTATTAGGGGAACCCTTTGTTTCCGGAGCTGACGCCATTTTGAGCGCCATTGTCAAGCGGGAACTGGCATTGGAGACAGAACAAGGCAGTCAATTCGAGCTAATCTTCAGTGCCGAAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 32370-28090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTH010000004.1 Synechocystis sp. FACHB-908 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 32369 37 100.0 36 ..................................... TGTAGTAGAACCAATCGGGGTCGTCAATAACTCCCG 32296 37 100.0 40 ..................................... CGGGGCTTGGGGGGTTGGAGTCCCCGCCCCCGTGGTGGGA 32219 37 100.0 42 ..................................... TGTGAGTTGCATAATGCCTCCTAATGGCTGTTGGACTCATAA 32140 37 100.0 36 ..................................... CTTGGTATTTGTAGTTCTCGATGAGTGTTTTAGGCA 32067 37 100.0 36 ..................................... TGATAACGGGATGCCAGCCCTAAAGGTGATGAGCGG 31994 37 100.0 39 ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 31918 37 100.0 39 ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 31842 37 100.0 39 ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 31766 37 100.0 39 ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 31690 37 100.0 35 ..................................... CTATTAAGGCTATTTTCGCCACTTCTGTTTGAAAG 31618 37 100.0 44 ..................................... GTCACACCTCTTCACGAATCCTCACATCATGAATAAGCTGCACA 31537 37 100.0 39 ..................................... CGCGGGTCGAGATGTCGCTGGACACGCTGGTGCCGGACA 31461 37 100.0 38 ..................................... CTGGGCGGACTGGAGTTGCCACCTGCCGATGGCCTGCA 31386 37 100.0 41 ..................................... GAGCCAAAGTCAACTAGCACAGGCACGGCAAGCCATCCTGA 31308 37 100.0 38 ..................................... TCGTGCATCTGCGCATAGGAAGAGGTTAATTCCTCAAC 31233 37 100.0 38 ..................................... AACGGGCAGCCCGAGTGGTGGGCATCGAGGTGGTGCTC 31158 37 100.0 40 ..................................... CCCCGCCACATTTTCGGATTAGAGGATTTGAATCGGCCGT 31081 37 100.0 42 ..................................... AGTTTCTCAAACTTTTCGGCGATCGCCGTCCAGGTGAGTTGA 31002 37 100.0 43 ..................................... TAGCGAAAAGTTATAGTTACCTTTGACCGGAGCTACCAACTCA 30922 37 100.0 35 ..................................... CCCCGCTGCCACGAGGGCAGCTGTAGACGCACCCC 30850 37 100.0 40 ..................................... TTAAATATACCCATCCCTAATAAAGGATAGAGATCTTGCA 30773 37 100.0 37 ..................................... GCTCTATTCTAATAACCCAAGCTTTTTTCAATTCTAA 30699 37 100.0 41 ..................................... CCGCTTGGTAGGATTGACCACCAAAGCTAGAAACAGGCACA 30621 37 100.0 35 ..................................... AGGGCGGTTAATCACTAGCGGCGATCTAGATATTG 30549 37 100.0 45 ..................................... TAGACTTCTATTTCCCCTCTTGCCGAGGGATGATACTGCAATTGA 30467 37 100.0 38 ..................................... TGCGCTCTCTTATCAAACGCCGCAACGCCATCAAGGCT 30392 37 100.0 39 ..................................... ACGAGCGGAATCTTCTATGGATCGGATCACATCCTTAAT 30316 37 100.0 37 ..................................... CTGGTGTCGGGGTTGTAGTATTCGTCTCGGTACAACA 30242 37 100.0 40 ..................................... ACTATAGGGAGCGTTACCCTAGCTAGACATTGCCTAATCT 30165 37 100.0 40 ..................................... AAGAAGCAGAATAATGCGATTGAGTGGACAAAAATAAGAA 30088 37 100.0 34 ..................................... GGTTACGTATCGGCGTAACCGCCACTCCTTAGAG 30017 37 100.0 39 ..................................... CGCCTCCTGCGCCCTGGAGGGGTGATCCTACACCTCGCG 29941 37 100.0 36 ..................................... GATTCTGGTATACGTTTATCCCACCACTCCTTAGCT 29868 37 100.0 35 ..................................... CTCGTAAGCTAGGCAACGGCCTTGCTCGATGCACA 29796 37 100.0 36 ..................................... GGTGCAGCTGCGCCTAAGGAGATGGCTGTACAAGCT 29723 37 100.0 39 ..................................... CACCTAGAGGGTACCTCCCGGTTAGACCGGGGCTCTTAT 29647 37 100.0 36 ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 29574 37 100.0 40 ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 29497 37 100.0 36 ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 29424 37 100.0 40 ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 29347 37 100.0 40 ..................................... CTAGCCTTTGTGGCTAACCCTCCTGCGCTTTGACATATAG 29270 37 100.0 35 ..................................... TTTTACCTCTTGCTCCTGCACAAGCTCAGCCTTAA 29198 37 100.0 36 ..................................... TCCTCCTCGCCTCTGAGAAAGAGTATGAAACACTGT 29125 37 100.0 37 ..................................... ATGAACAGATTGCCATCTTCTAGGCGGATAGCCTGGG 29051 37 100.0 40 ..................................... CGCCCATTGTTTGTGCTTCCGGAAGAAGTCTTTCAACTTC 28974 37 100.0 43 ..................................... GTTATCACGAGTTATCTTGCGCAAATCTTGTAGTGCATCTTTT 28894 37 100.0 37 ..................................... TTTAGCGGAGGAGACCTCTTCTATTTCTCCTATAACC 28820 37 100.0 41 ..................................... GGGAGAACCCTAAAAAGTTCTCCTGTCTAATCGCCACCTGT 28742 37 100.0 35 ..................................... CGCTCCAGAGTGCGCCGCCGCCGAATTGCGGTCCA 28670 37 100.0 45 ..................................... GAGACTCTATCTTTGGAGTTTCTAAGACATTGGCGGTTTCTAGGG 28588 37 100.0 41 ..................................... ATTGCTTGGCGTAGGTTGACTTACCCGAGCCTGGGAGACCA 28510 37 100.0 40 ..................................... TCCAAGGGCTCTTCGTCTTCAAAGGCCTTAGTTACCTCTG 28433 37 100.0 45 ..................................... ATAATAAAGCACCCTCAACGGACTATGCCATGAACAACAGGACCC 28351 37 100.0 34 ..................................... GTTGCCAGTTTTGCCGTTTTTGCTGTTCTGAGAT 28280 37 100.0 46 ..................................... CCCATAATAATTAGGCTCGCTACCATAAGGGGAAACTTCTTCCAAG 28197 37 100.0 34 ..................................... GCGCCTGAGGTGGTCAATAGTGACCCCATGGCTC 28126 37 97.3 0 .......................T............. | ========== ====== ====== ====== ===================================== ============================================== ================== 57 37 100.0 39 GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC # Left flank : CCCAGTGGGGGAACGGTGCTGACACACCCAACCCGCGACTGGGTTTATTTATGTTAGTTTACCCTTTCTATGGGTTCAAAATGTGTCTATCCCGACAAAATTAGGGCTATTACAACAACTCGTTGACACTGGCCATAAGTCTCAAACCCTTGTCGTGTCAGCGTTTGCTCGAAGTAAAAAATAAAACTCGTGGACACTACCATAGACAATATTTGCTTCTGTAATTGCTTCCCAAATCAGATCAAGTTTTGTTAAGCACTTGACGATTTTCAGCGGACGTTGTAGCAGTGAGCCTGACTTTGTCTGACGGAGCTTATGTAAAGTTTTATGGATTAATGCTTGCTTTCAGCAAATTTAGGTATTACTATGACCTTTATAGCCAAAAATAAGGCTTTTTATTGTTATGTTTTCAGTACGTAACAAATCGTTAAACGTCTACCTCTTGTTTGGCGGATTGGCACCTCGAAAACCGCATACAGACTGTTTTTCAGTGTGATAGG # Right flank : GATCAGCAAAAGTATCTCAATTGCTGACAGTGTCATAAACCTGAACAAGAGTCATTCCACGTCCAGAAATATTAAGCATTTCGTTGTTCAATTTTTTTACTACTTGCCGTAAGCCCAACCATTGATAATATCAATCAACTCATTGGACCAAGGGTTAGGATTGCGGTCTTGATAAATTTGCCAAAGAGACTGATAGTACCAAATAATGCCAGATTTGCTCCGACTGAACTTTTGCCAAATATCATTCCCATAGCGGTGTAGGTCGATCTCAATAGTGCGGGCATTATGGAGAGTATCCGCCAAAGAAATTTTCAGCACAGCGAGGGAAATGCGAGACATTTTTTGTAAATGCTGTTGTTTTCTCTCTTCCCAGGGCGGTTTCGGCACTGTGGAGCTATCGGAACACCCCAACACTAATTGAGCTACGGTTTCCCCAAACTTTTCCCGAATTACATTGAGAGTGGCTTCTCCCCCTTGGTCCTCCACCGCATCATGGAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 3 83904-80889 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTH010000004.1 Synechocystis sp. FACHB-908 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 83903 37 100.0 35 ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 83831 37 100.0 36 ..................................... TTGCGGACAGACTCGATTAAGTCAATAACAGCTTGG 83758 37 100.0 36 ..................................... CTTGCCCTAATTTTCCTGGTGGAAAAGCCGCTGGCT 83685 37 100.0 35 ..................................... ATAGCAAGTTGCTAGAGAAAGCGCAACAAAACAAG 83613 37 100.0 34 ..................................... GAGGTTAAATTGTTGTCGATTCAAGAAGACTTGA 83542 37 100.0 36 ..................................... AATAGACACGAATTCCGGTTCCAGACCCAGCCCGTT 83469 37 100.0 35 ..................................... TTCTTCCATCAGTCCAAGTTCTTCAACAATGTCTA 83397 37 100.0 35 ..................................... TGCTGAAGAAGCTGGAGAGAATCGGGCATCGCTAT 83325 37 100.0 35 ..................................... ATTCCAGATGTGGTGGAAGAAACCTACGCCCCCGA 83253 37 100.0 32 ..................................... AATCAGCTTCCGGCGTTGCCATTTGGATTCAA 83184 37 100.0 34 ..................................... GTGAGGGGGCCAGATCCCTGCCAGATCCCCCAAT 83113 37 100.0 35 ..................................... ATTAGATCTTTGGCATAAGGCAACCGAAACTGATC 83041 37 100.0 35 ..................................... GATTATCGTGCTTCCTTCGATGCTAACTTTGCTCT 82969 37 100.0 35 ..................................... TCCATAATGATTCTGCCTCGTTTCTACTTGGTTTA 82897 37 100.0 37 ..................................... TGTATGTCACGCCATCGGACAGGTAGGGAAAGCCTGG 82823 37 100.0 38 ..................................... CAACTGGCTAAGCTGGTCATAAGGCTTTGGGAATGAAA 82748 37 100.0 34 ..................................... TCGGGTTTCCCTCCTGGGTAATGACGCCTACGGG 82677 37 100.0 34 ..................................... CAAAGCTGGCACGGAAGCCCTTAAGGATATCCTC 82606 37 100.0 37 ..................................... GATGCAGAGATTCCACCACCAAAGGAGAATCCGATAA 82532 37 100.0 37 ..................................... AAAGATTGGGACTTTTAACTGCAAAATACCAGGCTAG 82458 37 100.0 41 ..................................... ATTTGTTGGGCCATCCTGCCCTGTCCATTGAGGTTAAGCGG 82380 37 100.0 37 ..................................... AAAGATTGGGACTTTTAACTGCAAAATACCAGGCTAG 82306 37 100.0 41 ..................................... ATTTGTTGGGCCATCCTGCCCTGTCCATTGAGGTTAAGCGG 82228 37 100.0 37 ..................................... AAAGATTGGGACTTTTAACTGCAAAATACCAGGCTAG 82154 37 100.0 41 ..................................... ATTTGTTGGGCCATCCTGCCCTGTCCATTGAGGTTAAGCGG 82076 37 100.0 35 ..................................... AAGTAAGGTTCAAACGCCGCTACGCAGTCTGGTCC 82004 37 100.0 33 ..................................... CAAAGTTGGAACGAAAGCTAACGACAAAAACTA 81934 37 100.0 38 ..................................... TTTAGCCATCGTCGGATTCTAATCGATCCAAAAGTCGG 81859 37 100.0 37 ..................................... AATCCTACCAAGCGGCTTTTGGTGGGCCTGGCTCCGA 81785 37 100.0 36 ..................................... TTCGGTTGATTGATGAAGATCTGATCGTCGAGTGGT 81712 37 100.0 34 ..................................... TCCCTTTTCGGGGATAGGTGGTGTCCCTTTTCGG 81641 37 100.0 35 ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 81569 37 100.0 35 ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 81497 37 100.0 36 ..................................... GGGCAATGTTAAGCATGGCTAGAAGGAATAGTTAAC 81424 37 100.0 33 ..................................... TTCCATTAATGATTCTTCAAAAATCACTCGATT 81354 37 100.0 36 ..................................... ACTGTTACTAGCCACCGCCCAACTCCTTTAATACTT 81281 37 100.0 37 ..................................... TCTTCTGTTACGTAGATTTTTCCTGTTTCGCCAACAG 81207 37 100.0 37 ..................................... CATCGCTCCCAGCATATTGTCCTGAACGGTCGGCAAT 81133 37 100.0 34 ..................................... GATTTTTCCAGTGATGGTGCATACCTAGCCGTAG 81062 37 100.0 32 ..................................... TAGTCCCTCCCACACTGCCAATATTTCTTCAT 80993 37 100.0 31 ..................................... TCCGTCTGTATGACTTATACTCGCAAGGATT 80925 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 42 37 100.0 36 CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Left flank : | # Right flank : ACGCCGCCAGCCCACCAGCGCCAGTTAACATCATCTCCAAGTCTAAACTGAACCCCACCAGTAGCGCTAAAAACAGCTATTTGAGAATCAGCCATGATTGTTTTCCCCGGTTGCAGTTTTTAGTTTAGAGCTTTCTCCCCTGTCCACTTTTTCGGGGCCACCTTACAGCCCTGGTAATAGGATTTGCTTCTCACTGCCATCACTATTGATGGGACACTCCACTCACGTAGTTACAGAAACCTCCCTTGTTAGGAGACCACTGCCATATATTTTGCTTTTTATCAAACGAAATTACTGCTTATATTTTTTGACTCTAAAACAGCAGTCACTGGCACAATTAGATTAGGTTTATTGTTATATTCCTATGCCTAAACTTAAAAAGCTTACTCCCAAGGCCGAAGCCCAATCTGAGTCCACCAGTCTAGACCGTCTAAGGGAACTGGCCCAAGACCCCAAACTGGCCAAGCTAGTAGCGGCTAATTATATGGCCCCACCGGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.5 Confidence: MEDIUM] # Array family : I-D [Matched known repeat from this family], //