Array 1 94456-94046 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIC01000176.1 Escherichia coli strain LVSTRB102 NODE_731_length_195344_cov_50.321152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 94455 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 94394 29 100.0 41 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCCNNNNNNNNN 94324 29 96.6 32 N............................ CGACAAAATTCTCAAAACTCGATCAGGAAAAT 94263 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 94202 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 94141 29 100.0 38 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGNNNNNNNNN 94074 29 96.6 0 N............................ | ========== ====== ====== ====== ============================= ========================================= ================== 7 29 99.0 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111719-109957 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQIC01000176.1 Escherichia coli strain LVSTRB102 NODE_731_length_195344_cov_50.321152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 111718 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 111657 29 96.6 32 A............................ AAAACAGCCTTTAGATTAGTACCTGACGACCG 111596 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 111535 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 111474 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 111413 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 111352 29 96.6 36 ............................T AGATCGCGCCACGAGGAAACGAATATGNNNNNNNNN 111287 29 96.6 32 N............................ CGGCGTTCCGTGCGGCAATTGGAATCACACCA 111226 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 111165 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 111104 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 111043 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 110982 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 110921 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 110860 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 110799 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 110738 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 110677 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 110616 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 110555 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 110494 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 110433 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 110372 29 100.0 40 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGANNNNNNNNN 110303 29 96.6 32 N............................ TATTACGCGCCAGCAATGCTGACAGCGGCAAA 110242 29 100.0 39 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAANNNNNNNNN 110174 29 96.6 32 N............................ CCGAGCCCGATTATCGGCATGAGCGATGCGGA 110113 29 100.0 38 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTNNNNNNNNN 110046 29 96.6 32 N............................ CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 109985 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 99.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //