Array 1 10074-9630 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAT01000016.1 Lentilactobacillus parabuchneri strain FAM21823 FAM21823_scf_0016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================= ================== 10073 29 96.6 32 ............................T TCAAGTAGTTGTCGATAAGCCTACTGGTATCA 10012 29 96.6 32 ......T...................... GTCCTTCTTGCGCATGTCATTAAGATTATCCG 9951 29 100.0 32 ............................. TCAAAACTAATTTATGGGTGGCAAACTACGGT 9890 29 100.0 32 ............................. AAAAAGACCGTTTCACCGGTCATTGAGTTTGT 9829 29 96.6 32 ...................A......... GTTATCTGATTCATTAGTTACTCTCCCTTTAG 9768 29 93.1 81 .......T..........A.......... ATCCGTTCTGACCTCTTGGCCCACTATCTCACGTATTCCCCACGATCCTACAATTGGGGCCGTGAACTTCGCAGAAACCAA 9658 29 93.1 0 ..........................A.A | ========== ====== ====== ====== ============================= ================================================================================= ================== 7 29 96.6 40 GTATTCCCCACGTATGTGGGGGTGATCCC # Left flank : GTTAAGTGGACGAGAGATGTTCACTATAATCTGCTAGAAATGAACCGAGTAACCTGGCGGGCTTTAGTTCAGTCTGCTATTCAAGAACTAGGCGGGCAGGCCACTTTAGCTCAGTTGTATGATATTTTAAAAGGATGTAAGCGCGCTGAAAGTGTTTCGGATTGGAAAGCGAAAATACGGCAAACACTCCGTGCTAGTGGATTTAAACGTGTCAAAAAAGGTACTTATACGTTAGATATTAGCTAGGTTGGGTCCTTTGAATTTGGTTGATGAGAATCTATAAGTTTCTCCATGTTCCTAATTTTTGCTGAATACTGTGTCAAACTGAGTTTAGTAGTTTGCGAAAAAGAATTCTCCTGTGATAAGGAATGGATTCCTCGTAAATTGGATAATGTATGCCAACACTTAGATGATTTCGATCAATTAAACTTAAAGCTAAAAGTCATTGAAAATGAGTGTTTTGCTATTTTCAAATGGCTTAATGGCAGCGTTTCTTTAGT # Right flank : GTTAAAGAAGTTATGACCAACGGGGATTTAGGAGAACTTGGGTTAACATCTAAGCCCAAAGCGACCACAAGTACTAGTAAACGAACTGTTAGCTCAACCAAGAAGGCATCCAAATAGGATGTTTTTTTATTATGAGGATGAATTAGCATATAAATCCAAGCTAATAGGCACTATCATTATTACGTGCTATATTATCTTCGTAGAGAGTCAATCGCTGAGTGGCGTGGAAAACCACTCATCACTCTTCCCATCGTGTTGAACAGCGGATAGCCCAATCGGCTGACTATAAATTTATTTCAATAAATTTAATTTATCCGGCGGTGAATAGCCGGAACGGTCCTTTAGGGATTCGTTAGTAGACTGATTAATGATGAAAGAGCCACTTTTCGCTGCCCACACCGAATGGTTTTTCTTCATGCTGATGCAAGGAATGGAATCTTTTCGGCTAAAATGCTGGACTTCTTTAAAATTATTGGTAAACTTCAGTTGCTTATGAAAGG # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.65, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1904-1631 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAT01000017.1 Lentilactobacillus parabuchneri strain FAM21823 FAM21823_scf_0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1903 29 93.1 32 ...........G...........A..... CAATCGCCAAAATGAAAACACATCAAGTGAAA 1842 29 100.0 32 ............................. TGTGCCCACCAGCCAGCTGTGCGCCATCTGGC 1781 29 100.0 32 ............................. AAGACCTTCGTACCCCCGACAACACGTGAGTA 1720 29 93.1 32 ...........G................C TTCGGTGAGATAGTGGGCCAAGAGGTCAGCGC 1659 29 86.2 0 ...........GCA.........A..... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GTATTCCCCACTGGTGTGGGGGTGATCCT # Left flank : GCCAAAGATAAAATCATTTCCTTTGGTGCTGTCAAACAAGCTCGAACAGGTAATTATACTGACTTCTATCAGCTGGTGAAAGTTGATTCTGATATCCCGGAGAAGATCACTAAGCTGACAGGTATCACCATTGATCAAGTGCGGACCGATGGAGTTGAATTAGAGAACGCATTGGATTCCCTGAAGGATTTTATTGGTGATTTACCAATCGTTGGCTATAATTTGCGCTTTGATCAAGCATTTCTTTCCGCCGGGTTTCGAAAAATTCAGCAAACAGATTTAGAAAATCGGATGATCGATTTAATGCCAATTGTCAAAAAGGCTGACCAATTCCTGGATAACTATCGGTTGGGAACAGTATTGGAAAAGTATGGTGTTGACAATGCTGCGCCACATAATTTATTATCTGATGCCAAAGCAACACTTGGATTAGCAAATAAACTAATGAAAAACGGCCATTTGGAAATTTAAGAATGCCGTCATAGCAGGGATTGTCTAGT # Right flank : GGATATTATGGCCGCTACTCGTGAAGATGTGCGTATTCCCCCAATGGAACGGTTGATTTCACGGGTTAGTAGTATTCCTTACACATTAGGAATAACCCTTAAAAGTAGAACTCATTCATGTTAGATCATGACAGGGTTAATAGCCAAAAATTGAACCTACAAAAATAGCACCTAACCAGCCGTTTTTCACGAACTAGTTGGGTGCTATTAGTATTTGCTTATTCATCAACTAATTTCTCAGAACCGATAAATTTCTTGTAAAATATAATGTGCAACCAGATGCTAACGATAATTATCTAACAGCTTAAATTTATGCTGGCTTTGGAAGTATGCACCAACCTTCAGTAACAACTTATCATTACCCTTAGCTGCCTCAAATTGAATTCCCAGAGGCATTTTTTGCTTGCTAACGTATGTTGGTAAGCTAATTGCGGGCTCTCCTGAAAGGTTGGCAAGCTGAGTGAATGGTGTCTTGGTCAATCCATGAAGCCAAGCATCGT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACTGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13603-13392 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAT01000017.1 Lentilactobacillus parabuchneri strain FAM21823 FAM21823_scf_0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13602 29 96.6 32 ............................T ATCGATAACACCATAGGCAATCGCAACTGTGG 13541 29 100.0 32 ............................. GTCTTCAGCAGTTAGGAAGCTGTCGCCGTTTT 13480 29 100.0 32 ............................. GGAAGCTCGAGTTTATCGGCTTCCGTTTTCAG 13419 28 79.3 0 .......T.....A....A...C-.G... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTATTCCCCACGTGTGTAGGGGTGATCCC # Left flank : ATGATTTAATTAGTCACGGTGTTGATGCAGACTTGTATGAGCTTCAGGGTGCTGAGCATATGGACGAATTGTTTATGCAACCAGAAATCACTAAATTAATAATTGATTTTTTGACTACACACTTTGGGAATGGTGCGTAGATTCTAGAACTTTTTCGAAATCAAGGAAATGGTCTTTAACTAAAATTATTTTTCAATGAAAGCGAACTTCTGAAACAATTTATAAAGAAGTTCGCTGTTTTATTTTGGATATTTGTTAACTGAAGTAAAAACCTTGTGCTGAGGAAAATGAGGGGGAGCTAAAGTAAATGTTGAGATGTCGGCCGAATGTTAGTAATATTAGTTTGTGCGGTGACGTGGATCAGGGATCGAAAATAGGCTATTCATACCTTATGGGTGATGCAAGTGGTCTTTTGTAGTTGGCAAAACTTTATTTGAATAGAACTAATGAAATTTGACTGTTTTCCACTTTAAGAATGGCTATAACAAGGATTTTTTAGT # Right flank : CTTCAATAATCAGTGATCAAGCTGCTAAGATTAAACAAGATACTGAGTTCCACTTGGGACTTAATTTGGCCATAGTTTTAGGCCAGTTAAAATCGAACGAATAATCATAACCGTACACGCATTTTTAGTTAGGGGGTATCAATTAAATATGGCTCATACAAAACCAAACTTAATTACAGCAAAACAGATCGACACTTTTATTAATTCAAATGCAAGCAATGTGGGACAATTGGATGATAATACGCCTTTAAAGAAATTGCCTAAAAGCTTTAAGCCTTTAAAGAAATTAAAAAATCAGGTAGCGTCTCAGGCAATTATCCAAAATTTGTTAAAGGAACAGTATTTTTGGAGTACCCAAACAACAATTTTAGAGCCAGTGTCCACCTATTTGAACACTTTGGTTGATAGTCAAAATAAAGCAGTCTTAAAACAGTTAACCTCACAAGATATCAAGCTAATTAATTTGTATCAAATCATTAATCAACTACAAACTAATGGTG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTAGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 41704-41186 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSAT01000017.1 Lentilactobacillus parabuchneri strain FAM21823 FAM21823_scf_0017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41703 29 100.0 32 ............................. CAAAGCGGCGTGACTTGCGTAGCCCTCACCGT 41642 29 96.6 32 ............................C CAGCTAATGCACCACCAAGTGCGCCACCGCCA 41581 29 100.0 33 ............................. AATTTGACCAACGCGCCGTTTTTGATAACTAAA 41519 29 96.6 32 ............T................ GAGGTCGTACCTCGTAAAACAAACGTGAAAGG 41458 29 100.0 32 ............................. TTAGGCTTGCTCTCGGTATCAACAGAACTAAC 41397 29 100.0 32 ............................. CTGGGGATATGACCAAGAAGCAAGCCAATTCT 41336 29 100.0 32 ............................. CCGTATTCGGTAATCATTCAGGTGATTTAGAG 41275 29 96.6 32 ..............C.............. TTAGTGAAGCTGTTTGAGTTGGCATTTTCTCT 41214 29 86.2 0 ....................A..G..TT. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.3 32 GTATTCCCCACGCATGTGGGGGTAATCCT # Left flank : ACAGTAGTTTGAGCAGGACACTTAAATCATATTCACGTGGCCGGCCAAAGATATAGGGCTCTTTAATGGCTAAGTCTTCAACGACATAATTGATAAAACGGGCCGGATGGTTTTCCTTGGACTCCCAATCAGTTGCGATACTCAAAACGGTTTGGTTTATGTTATAATTATTTTGCATATTGGAACGTCCTTTCGAGGATGATTTCGTAGTCATCGGGGTTCGGCCGATGACTTTTTTTATTTTAGATTATAACAAAAGCGATTCATCGAAAGAAACATTTTTCTTCGATGAATCGCTTATTTTTTGGGACTTATGTCACAGCCCCTTCAGTTCATATTTGTACGGACCGCGTTTTTGTATTTGTGTTGTGGCATTTATGAATTCGTTTATAGTAAACTGTTAGTAGGATCGTTAGATAAAGGGGTAGAGTAAAATACGAACTAATGAAAAATGGTCATTTTATAATTTGAGAATGGCTATGTTTCGGGGTTTGTTTAGT # Right flank : GCCCTCATAAGCTGGTAGCAGGCTATTCGCGTGAAGATCCATTACTGATCAATAAAAAGAATCGTGATCTCAGGATAATTTGCTTCTCCTTCGAATCACGATTTTTTGTAAGTATTGAACTGGATTTATCCTTCAGCGTCATGAATCGCATCGGAAATATTATCAGCCGAAAAATCATGATTCATGTATGCGTCATTGCTAATCGGCAAATGCTGTTCCAGCGTATCAAACAACTGATAGGAAACGGTGCCTTTGTCTAAATGAAATGCCAACACATGGCCGCCAAACTTATGATCATCTGATAAAAAGTGGTGGTGGAAACCCGCGACCGCAGCCCCGTCAAATAATTCCGGAGAATAGTAGCTAATCATTGTTCCATTGACCTGATCACGGGTAAAGATGCTTTGATTACGAGCGGTTTCGGCTAGTGTCTGAAAAGGTGGCACGGATTTCTTAACCGCCCGAGTTTTTATTCCGGAGAAAGTGCCAGTAATTTTGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //