Array 1 2155-3040 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYT01000012.1 Campylobacter concisus strain AAUH-44UCsig6 1106717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2155 30 100.0 38 .............................. AAGCCAAGAGGATTTTTTATTCTCTCTTCTTCGCTCAT 2223 30 100.0 36 .............................. AATAAGTAGTTAAGGCTACTAAATTTCTTAAAAAAG 2289 30 100.0 33 .............................. ATCAATAGTCCTGAAAAGACAGACGACGGACTA 2352 30 100.0 35 .............................. TTAGGGGCTGGCAACTTCATATTTGATAATTACGA 2417 30 100.0 36 .............................. TAATCGATGTTGTATGCCTCATAACCCTTGCACCAT 2483 30 100.0 36 .............................. TGAACTAGTAAATTACTATGAGAGCTTGGGCGGTGA 2549 30 100.0 35 .............................. AATTTGTTAGAGTGGGCGGAGCGATATAGATTTTT 2614 30 100.0 37 .............................. AACGCCATATACAGCCCTTTTTACAAAATGAGCGAGA 2681 30 100.0 36 .............................. GAGAGCTTTGGGATCAGGCAAAAGTGCAAGCAAAAG 2747 30 100.0 36 .............................. CGTCTATGGCGGCTCCATTTATGATAGTCCATTTGC 2813 30 100.0 34 .............................. TCCCAAAGATAGGCGTCTTTTAGGATTATGCCTG 2877 30 100.0 37 .............................. AAAACAACCTTTTGCTCTACTTCATCAGTAAAGCCAG 2944 30 100.0 37 .............................. AACGCCATATACAGCCCTTTTTACAAAATGAGCGAGA 3011 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AAGCGAAATTTACAAGACCGAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGATCCTTGAGCCTTCACCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTTATATTTAATATGCTAAATAAAAAGGAGATCACCGCAAAAGACTTCCAAACGGATGCTGGCAGGATAAAATTTAGCAACGATGCTGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGCGAGACGCTCACAGTGGGTGGCAGGTGATCCGCCGCGAAGCGAATAAGCTCAAAAAGTGTATCTGCGAGGACGTGCCTTATGAAGGCTTTAGGTGGGAGTAAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTAGGGCTTGGCGTATTTATACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGTGCT # Right flank : GAGAGCTTTGGGATCAGGCAAAAGTGCAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 1162-1002 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYT01000130.1 Campylobacter concisus strain AAUH-44UCsig6 1106842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1161 30 100.0 34 .............................. CTAGCTCGCTTTGTAGTAGATCGTGAGGCATTGG 1097 30 100.0 36 .............................. CATCTACAAAGCAAACAGCAAAGCAAATGAAGCAGA 1031 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : TCCTTGACGAGTGCCACA # Right flank : AACATATAAGCGACGATTTAATTTTCATAGAAGAAATTTAAATAATAGATCAAATAAACAACAATTGCTATCTTACAAAGATGTATCAAACTGATGATAATATAGTTTTATGCAGATACTTCGAAAAACCAAAACCCCAGCCAATACAGCCAAAAAAGAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACAAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCACCATCAGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAGTAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTGCTTTTTTAATATC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 5492-4540 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYT01000233.1 Campylobacter concisus strain AAUH-44UCsig6 1106946, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 5491 37 100.0 37 ..................................... TTTAGAACATCATAGAGTGTTGGTGTTTTATTCTCTA 5417 37 100.0 38 ..................................... AGCTTACTTCTCTTTCAAAGACAACGTGGTTGCCTTCA 5342 37 100.0 40 ..................................... TCCATCTTGGAATGAGATCCAGCCCTCCCATTCCTGAGAG 5265 37 100.0 37 ..................................... AACTATGAAAGTTTCGGGCATGATCTATAAGACCACC 5191 37 100.0 41 ..................................... AGCTACCATTGTGAGTGGTAGCGCCAGCTTTTGTGGCGGAA 5113 37 100.0 40 ..................................... ATTTCTCAGTTGCGCCTTCTTCTAGACATTCTTGCTTAGA 5036 37 100.0 38 ..................................... TATACTTAATAGCTTTTCTCTGTCTGGTTTTCTAGAGA 4961 37 100.0 39 ..................................... ACGTAGAAGATAGCAATAGCAATAAGCCATTCCATCTGA 4885 37 100.0 38 ..................................... ACCGTCGCATGAACCAGACTCATAGGCTGAGTCTGCTT 4810 37 100.0 40 ..................................... GCTGGGGAATACTTATCGGCGAGATCCTTTATCTCATCTT 4733 37 100.0 43 ..................................... AAAGATTTCTCTTTTACAGCTTCTTCTTTAGCAGCATTAGCTA 4653 37 100.0 39 ..................................... TTTATGTAATTCAGTTGATAGCCGCTATCTTTACTTGGA 4577 37 94.6 0 ................................A...A | T [4542] ========== ====== ====== ====== ===================================== =========================================== ================== 13 37 99.6 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATACCTAAATTTAGGGGTTCTTTTACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTACTAATTTTTTCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : AAATGACAAAGCGTAGGCGCTTTATGTTATAAAAAAATGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTACTTCATGGCTTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAACGTGCCCTTAGTCGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGACTAGCACGAGCAGATGAGTAAGATCTGCTTGAAGATGATGAAGAATAAGAACGTGAATAACCTTTTGCCATTTTGGCCCCCTTGTGTTGAATTATTTTGTTTTGTTGGGAGAATTATAAAAGAGTGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAATATAAAGGATAAAGTAATGGACGCTCAAACTAGGATACTATGGCTACTTAAAAAGCTAAATCGTGGCGAAATAATCGAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 10995-11945 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYT01000074.1 Campylobacter concisus strain AAUH-44UCsig6 1106782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================== ================== 10995 33 100.0 38 ................................. TCAGCAGAAGCTAGGTGATTTTGAGCGTTATAACATTA 11066 33 97.0 44 ..............A.................. GTGAAACACACCGTCAATATTGTAGTAAGTCATCTTTTGCATTA 11143 33 100.0 50 ................................. ACAATGGAGTGTTCATTTTTATCTCCTTTATAAAAAATAAAAACAGATTT 11226 33 100.0 43 ................................. ATTATATCGTTTGCTCTGCTGAAGGCATCTTTTTGGGACATCT 11302 33 97.0 45 ...........T..................... GCAATTCTCAGCGTAAAACTGATAATCTTTTTCATAATCGTATTA 11380 33 100.0 42 ................................. TCGAAAGAAACGATTGGACATTGTGGGATGAGGGACCAATTA 11455 33 100.0 45 ................................. AGCTAAAGACAGATAAAGCCTATTCATATCTTGCATATCGCATTA 11533 33 100.0 43 ................................. AGGAGCAGCTTTTTCTGTCCCAAAACAATTCAACATTGAATCT 11609 33 100.0 43 ................................. AACTATTCTCTTAACTATGTCTTCTGTTAACGTACTCATATCT 11685 33 100.0 41 ................................. ACAGATGGTGCTTCTTGTCCGTTGTTTTGCTCTGCTTATCT 11759 33 100.0 44 ................................. GCGTAGCACCAATATTTGCCGTCAATCAGTGCCATGTCATATTA 11836 33 97.0 44 ....G............................ AACATCCCAGTCGTCAAAAGCTTAATCGAAAAAGCTGAAAATCT 11913 33 97.0 0 ...............................G. | ========== ====== ====== ====== ================================= ================================================== ================== 13 33 99.1 44 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : TTCAAACATCTACCTTGATCAAATGGATAAATTTCTCGAGCATAGCAGTATAGAGTTTGTAAGATACGCAGATGATTTTGTTCTATTTTTTGGCTCACGTGAAACCTGCGAGCAAGGGCTTGCCAGACTAAAAGACTTTCTAGTAACCACATAAATTTATCCCTAAACGAAGCCAAAACATCCTTGCACGACAAAGATAGCGAATTCACCTTTCTTGGCGTAAATTTCAAAGCTCACGAGCTAAGCATAGGCGAGGATAAATTTGCACGCATCTTAGCAAAACTCACAGCCTCGTCCAAAAAGCCAGAGATCGCCCAAAGCGTAGAGAACATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCGGCCTATCAATAGTTCTTTTAAAACTCATTGTTAATTCACAATCGTTTTTTAGGCTATTA # Right flank : CGGGCAGATCTATTGAGCATAGTTCCCAAGTATTAATTCATAGATATATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGTCATATTGACCATATCTGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGACACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTCGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGCCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //