Array 1 7006-6246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAI010000012.1 Salmonella enterica subsp. enterica serovar Derby strain GZ19MPS20 YZU1961_012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7005 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 6944 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 6883 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 6822 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 6761 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 6700 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 6639 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 6578 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 6517 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 6456 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 6395 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 6334 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 6273 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 213028-211533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAI010000006.1 Salmonella enterica subsp. enterica serovar Derby strain GZ19MPS20 YZU1961_006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 213027 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 212966 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 212904 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 212843 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 212782 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 212721 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 212660 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 212599 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 212538 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 212477 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 212416 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 212355 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 212294 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 212233 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 212172 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 212111 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 212050 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 211989 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 211928 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 211867 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 211806 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 211745 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 211684 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 211623 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 211562 29 93.1 0 A...........T................ | A [211535] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //