Array 1 54946-55106 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902351.1 Desulfitobacterium hafniense PCP-1 A37YDRAFT_scaffold_4.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 54946 30 100.0 35 .............................. CTCTGCATAGTTCAGTGTCACTCTCGAGAGTGAGC 55011 30 100.0 36 .............................. CTGTGATGCCTCGACCATCCATGCCCTCGTCGAAGT 55077 30 93.3 0 .................A..........G. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 97.8 36 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : GGGCCGAAAGAGCTGCTTCAATTGGCCGTCGATGGAGGAATAGGAAGTAAGAACAGCCAGGGATTCGGGTGTGTGGAGATTATCAATGGATAGTAAACATCGCCGTTGGGTCTGTCCGAAATAGGTACGCGCGTACCTATTTCGGACAGACCTTTTCATGGTAAAGTGATACTGGAGTTTGGTATTAAAGCGGTTACCTTTTTCAACAATCCCGGAATTTTGATTTTAATTTAATCTCTTCTTATGCTAATATTAGCATGAGAGATAGGGCTGATTTCGTTTTAGACAAACTAGCCGGTTTATTACTTCTACCACTAGATTAGGGGGAGGATAAAAGGCTAAGTTTTAATCGTAGCTCTTGTCGTCGATGTGCAGTGAGGTAAAAATGCCCGGGGATCGACGACAAAGAATATGGCAAATAAGCGGGCTAAGAAGAGAAGTGCTGATTTGGTTAATTTTGGTCAATGGCTGTAATGGCTTATTTAATGCTGGTGAAATGG # Right flank : CCAATCAGATTAAGGAGAAGCAGGAACGGCTTAGAGAGATTAGAGCTTCTGAGAAGAGTCTAAAAATATATGTACATCATGTCGGCGGTAGTTGTTGCCCAAGAGAGATCACAATGCTAAAGGCTCAATAAAATATGTAATACAGGAAAGAGTAATTATGCGGAGGAAAGAGTCTGTCCGAAATAGGTACGCGCGTACCTATTTCGGACAGACTCTTATTTGATGAAAAAGTAAAAAATTGTAACAGATAAAATGACGTGGCAGGAGGTCTAAATCTAGTCATCCCCTACCGCTCACCCCGGTGCAGAGGCAATGACACGAAAAGGTTTTGAGAAGAAATCCGTCTATGAAGTATCAAGATGGAGCGGGAGGGCTGGACGATGAGTCGCGGCTTGTAAATTCCATTACCTTCATTTTGTACCACCAAAATAGCTCAGAGCGCTGGACAAGGGACAGGGAAGATCATCCCTATTTGGCAGTTGTGAAACCAACGTGAAAAA # Questionable array : NO Score: 8.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 97863-97694 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902322.1 Desulfitobacterium hafniense PCP-1 A37YDRAFT_scaffold_13.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 97862 33 100.0 33 ................................. TGAAATCTCATGGCCGACTCATTTGGAATTATG 97796 33 100.0 37 ................................. ATCAAGCAGCACGATCCGGATGGGCCGAGAAGCCAAT 97726 33 93.9 0 .........................A..T.... | ========== ====== ====== ====== ================================= ===================================== ================== 3 33 98.0 36 GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : CGCCTAAGCTCTTGATCTGCGGTAAACACAAAAACAGACCTCGTCTCCGCACCAAACGCACATAATCCGAACTGCTTACGACAGGTAAACCCTGTGGCGAAGAGTTCGGATTGTGTTATATCTCTGAAATAAGTTAGAGGATGCCAGATAAAAGGCATCCTCTAACTTTCGCATTGCGATTATTACTGTATTTTATATTTTAAGGTTTTATAGACTGCCTGACCACATTCGGCCAAGGAACAAACTACAATAACAATGGCAATAAAAACAACAAACAAGTTCACTCCGCCCACTTCCATGAAGCCTAATGGGTCAAAGCTGCTCCAATCAACACTTTGCAGAAAGGCTATAAACTCCGTGCTAAACAAATCTGGTCTATTTAGTAGGTAGATCATGATGCACATGTTGATTATAGTGCTTACAACAACTGCACCGCAAACAATTGGCGTCCATCTGCGGACCTTGATTTTGAAAATACATGCGCCAACACCTAATATAGC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 109672-108975 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902322.1 Desulfitobacterium hafniense PCP-1 A37YDRAFT_scaffold_13.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================================================================== ================== 109671 32 100.0 35 ................................ TGCGGCCACATCCGAAATGTCCTTATTGCCGAGGA 109604 32 100.0 99 ................................ CGTCTTTGCATTGCTCTGTCCAGCCCAGGCGATAGTCGCTTATGAGCATCCCGCGATGAAGGATGGACACTTAAATTGCTCTGTCCAGCCCAGGCGATA 109473 32 100.0 36 ................................ ACCATTGGCGCTCTTGAAATTGCGCTCCACAGCCAG 109405 32 100.0 35 ................................ CGGATCATCTTTAGTAGCCAGAAACTCCTTGGCGA 109338 32 100.0 33 ................................ GCAGATTATGCAAGGTGTTGTTCCGGTTATAGC 109273 32 100.0 34 ................................ TCTGCTGACCATGCAAATATCTCCTCTGTAGCAT 109207 32 100.0 34 ................................ CTCCCGCAAAGGATATCAGTTTCTTCTTCGACTG 109141 32 93.8 37 .............A.....T............ GCATACGAATCGAAATGGGTAAGAAAATAGGGAGAAA 109072 31 81.2 34 ...A.....TTA.-.....T............ TGCTCGTCAGTGCAGTTGATGTGCTTCCACAGAT 109007 31 87.5 0 ...A......T-.......T............ | A,T [108992,109000] ========== ====== ====== ====== ================================ =================================================================================================== ================== 10 32 96.2 42 GTCGCTCCCAGCATGGGAGCGTGGATTGAAAT # Left flank : TTTTCATGTTCAGTCGATTGTTCTTATTGAAGCTTACTGGGTCTTAAGCAAAGTTTATAATTTTAATAAAGAAGCGATAGTGCAGGTTTTCGAAGATTTTATTGAAGCAGATGGAGTAGAGCTTGATGAAGACGGTCTGGTACAACGGGTATTGGCTCGTTTTCGAGAGGTAAAGGTTGACTTTGTGGATGTTTACTTGGCGGAGAAATCAAGAAGTTTGGGAATTCCGGTGTTAACTTGGAATGCTAAAGATTTTAGAAAGTTGGAATGTGAGTTTTACAGACCGCAGGATTTAATATAGTTTTAAGGGATTGCAAGGGATAACTTTGTTAGTGCGAATGTGTAGTGAACATAAAATCTCTGGGGAATTCGCACCGTGAAATTATAGAAATTTTATCGAAATATAGCAAAATATTTTGAATCTAGTTGTAATTTTTGACGAAAAGGGTGAAAACTTAAGAAAAACTCTCACTTAAAGAGAGTTTTGCATTATTTTAGCA # Right flank : GCATATGAATCAGTAACTGTACCAAAACCATAACATATAGCCCCCTACATGGAGTGTGATTGAAAATATAGTATTTTTATACCAGTAGCAATGTCTTCATTTTCTAATCATCATAAAATATTTTAAAATTCTTAATGGAAGATGTAAAAAATAGAATACAATCTAATTCTTCAAGATATCTCAATGAAATTAATCCTATTACGTCTTACCTCTTCTAAATTTGCTAAAGGAGTAAAACTATGCGCTGTGCTCACATCAATCCAACTATCACAGCAGAACAAAGTGTTAAAGAGCATCTCCGCAATGTGGCTGAGTTAGCTCGGGAATTCAGTGCTAAAATCTCCTTGGGGGCGGCAGGCGAGCTGTTGGGCATGCTTCACGACTTAGGGAAAGGCACTGGAAAATTCGACGCTTACATACGTTATTGCGCAAAGAACCCCGATGACCAGTCTCTTAAGGGCCGGATCAACCACTCCACTGCAGGAGCCAAGCTGATCTAC # Questionable array : NO Score: 8.43 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCAGCATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.40,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 115259-115022 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB902322.1 Desulfitobacterium hafniense PCP-1 A37YDRAFT_scaffold_13.14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 115258 33 100.0 36 ................................. TGTCTGGCTGTGTATAGATTATTGCCATTGCATCAG 115189 33 100.0 35 ................................. ATACCATCACCGAGGGCATGCTTTGTGCATTTTTT 115121 33 100.0 34 ................................. TTTAAGCAGTAATACGTTATCCAAGCACTATCAC 115054 33 97.0 0 .A............................... | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 99.2 35 GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT # Left flank : | # Right flank : AAATAGGAGGGACTATTTCAACTGGTCCCTTGATTTCTAATACAAAGCCGGCCTGGGATCCCCAGGTCGGCTTTGTAGGTCATTTAAGCTACGTTGCTCCCTGTGAGAGAGCGTGGATTACTTAAGAAATAGGTTTCTATTGATGTTTTTTAAATAATCTGATAAATTATAGTTAATCGGTCGGCTGGCCGACTGAGAAGGAGGTTTTTTCAAATTGATGGACAAGAAAGAAGCGACAGAACAACCCATTGACATGCGCCGGCATATTCTCACTGTGGCCGGTGGATTGATGATTGAAAAAGGAGTCAAGGAAACCAGCTTAAAAGACATCGCCCAGGAAGCGGGGATTAGCAAAGGGACATTATATTACTATTATTCAGCCAAAGAAGACATCATTTATGACATTGCCAACCATAACTTAAAACAAATTACGGACGGTTTGCTGGCCTGGATTGAAGATGATAATACAGAGGTTGCCCCTGAGGAGGTTCTGAAAACAG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: R [matched GTCTCTTCTCGTATGAGGAGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.10,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //