Array 1 50-540 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWX01000024.1 Ruminococcus sp. AF17-24 AF17-24.Scaf24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 50 32 100.0 35 ................................ TTAACGAGGGGTCAACCGTAGAAATACCCTCGGAC 117 32 100.0 33 ................................ TTCCGCTTTACTGCTCGCCCTTTCTTTTATTTC 182 32 100.0 33 ................................ CTCCCAGCAAGCTAACCTTGACTATATGAGTTG 247 32 100.0 34 ................................ AAACCCACAACGCCGATTATCAAATTGGCTATGC 313 32 100.0 35 ................................ AAGATCTGCGGCAGTTCTATAGTGGCGATAGCCCT 380 32 100.0 33 ................................ ATCATACCAGCGATTGATTTTGTCGACCACATC 445 32 100.0 34 ................................ CCGCAAAATCTCATTTGTAGCTTTTTCCGTACCT 511 30 93.8 0 ..........................--.... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 99.2 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : TTCGAATAAAATGTGTCAAGTGATATTGACAAAACCAATATACAACTCAG # Right flank : TTTTCGTTTCAACGCAGGACTTAGTGTACGTTATCCGCTCAGACCACAGCAAATGCTGTGCGTGGTGTTCAAAGTTTGCAGGAAAGTACGTTTATCCCGATGTTCTCAAGTGCATTTTCTTCTGAAGAGGAATTAGTAAAAACCATATTGCATGAAAAGTGCCACGTTTTACAGCTAAAGAAACATGGCAAAGCATATGCTCAGCAAAACTTAGATTTAATGGAAAAACAAGCTTATAGGTTTGAACGATTATTTTATAGCTTGGTTACAAAGAGGTGATAGTATGAAATGGCTTGACAATCTAGCGAGTATAAAGCAGCTCCATAAAGCAGGCAAATGCCCATATTGCGGACAAGAAAATACAGATTACAGATTGCTTGAAATAAGCAGTGGTAAAGGATATGGAGATGTTTGGTGCAATGACTGTAAAAAACCTTTTCATATTTCTCGTATAGAAGTATCAGAGACAGACATTCGAGAAAAGCAGTTACCTCCTGAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 68603-68377 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWX01000005.1 Ruminococcus sp. AF17-24 AF17-24.Scaf5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 68602 31 100.0 34 ............................... GGTGAATGTTACTGTTGTTGTGTTTTCCTCAAAA 68537 31 100.0 34 ............................... GATCAGAAGTCAGGATAATGTTATCCTTGTCCGT 68472 31 100.0 34 ............................... GGTCCAGAAAATCGTCTGACATTATCGTTTGTTC 68407 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 4 31 100.0 34 GTTGCAACTTACGCATAGGTGTAAAATACGA # Left flank : GAACTATCCAAATGGAAAAGCTGACGGGTATTACATCTAAATCTGATCGTTTTCTAAAAGACTGGACTTATTATGACCTCCAGACAAAGATAGAAAACAAGGCGAAAGAAGTAGGGATAAATGTCGTCTATATCGCCCCTAAATATACAAGTCAGAGATGTAGCAAATGCGGATATATCCACAAGGATAACAGACCAAATCAGGCGAAATTTAGATGTCTTGAATGCGATTTTGAAAGTAATGCAGATTATAATGCAAGTCAGAATATCGGAATTAAAAACATTGATAAGATAATAGAAAAAGATTTGCAAAAGCAAGAAAGCGAAGTCCAAGTGAACGAAAACAAGTAGAAGGTTCACACAATTTCAGGGCGACTCGGCGTCCTAAAATCGAGAAAGTGTACATAAGTTTTTAACAAAATACGGTAAATACTCTCGGTAAGGTTTTAACGTGCACATAATAATCCGTGCAACAGGGTTACACTTTTGTGCAATTTTGCA # Right flank : AGCACTCAATTTGCATTGTGATACGATATTGAATTACAATCACATATTTGTAAAACAACAAAAGGGCTGTCCACACAGCCCTTTTGTTCTTATCTAACCTATGCCAAGCCCCCTACCCCTTAGGCTTTTTCATAGTAAGCGAAATACGCTTTTTCTTCAGGTCAACGTTAAGTACCCAAACCTTAACTACCTCCCCGACCTTTACGACCTCAAGAGGGTGCTTTATATATCTGTCGCACATCTGAGAAATATGTACAAGTCCGTCCTCGTGAACACCGATATCAACGAACGCTCCGAAGTCTATAACGTTTCTCACTGTGCCCATAAGCTCCATGCCCGGCTTCAAGTCTTTAAGCTCCATAATGTCGCCGCTTCTCATAAGCGGTGGAGGCAGCTCGTCACGAGGGTCACGACCAGGCTTTTCAAGCTCCCCTACTATGTCCTTTAACGTCGGTGCACCAATGCCAATATCTGTGGCAAGCTTCTTCATGCCCATTGCA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTACGCATAGGTGTAAAATACGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 616-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWX01000008.1 Ruminococcus sp. AF17-24 AF17-24.Scaf8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 615 32 100.0 36 ................................ GCACATCTTAGCCATTAAAGTTGATTTACCGCTACC 547 32 100.0 33 ................................ TTGTACTAGCCCTATGATATAATCTGCACTTGT 482 32 100.0 34 ................................ TATCTTTGTATTGCACTTGACCTCTTTAGAGGAC 416 32 100.0 34 ................................ GAATTTGTTTATCAAGCAGATTAAATCGTTGAAC 350 32 100.0 34 ................................ ATGTTCAACTTTAAAGTTTCTAAGGTCAGTGAAG 284 32 100.0 35 ................................ GTGAAAATAGGACAGATAATGATAAAAATTAATAA 217 32 100.0 33 ................................ TTCGAGTTAAGTTAATGACATTTTCAAGGGCAT 152 32 100.0 35 ................................ GCAAGCTACATCACCAATGAAGTACCCGAGGTCGG 85 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGACAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAAGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCATGCTATTTATGAATGTACAGTGAACAAAATCAAACCGATACCAATTAAATAAAAAAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : TACGCTGATTTTCACTAATCCTGTATAATAAAACTTGACACATACAAAACAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29667-29234 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTWX01000015.1 Ruminococcus sp. AF17-24 AF17-24.Scaf15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 29666 36 97.2 30 ......T............................. GTATATGGCTTGAGCTTTCTTAGAGTGCTT 29600 36 100.0 31 .................................... TTTCGTATACATAAGGTATAGACTTGAAGCG 29533 36 100.0 30 .................................... TATCGTCAATAAAAGATGCATCCTGTGTGC 29467 36 100.0 30 .................................... GCTAGTTCCTGTACTTGCATTTGGAGTGTC 29401 36 97.2 30 ...............A.................... GGTCAAAACACTGCACGTCATATGCCTTGG 29335 36 97.2 29 ..........A......................... TAACCACCTAGGTCACCAGCTTTGACATT 29270 35 88.9 0 ...........................A-..G...G | CG [29237] ========== ====== ====== ====== ==================================== =============================== ================== 7 36 97.2 30 CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Left flank : ACGCCGCCCTCACGCTTGGGCAGAAATGTGCTTGGGGGTATGAGCATTTTTATCACCTCTTGTATCCATTATATCACAAATGTACTTTTTGTCAATATCACAGAAAATTATTTTGCTGAAATTGTGATATAAATGCCGTAAAAACGTGATAAATGTGCAAAAACATAGATAAAAAAGTTTTTGGAAATTACACTTTTGTTGACGATGATAAGGTGGTATAATGTATACAGAACAAAGGACAGGAGGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGACTGCGCTATCGCAGCTGTCAAGGAGATTGGGGAATGAGATGAAATAACAACAGACGGGAGGTGATGAAAATGCTTTATGTAAAACAGCCACTTTCTATTGACATTTGTGTCTGAAAATGGTATAATATATATGTTAAAGCGTCGATAAAATAAGTTTGGTGTTTTATCACAGAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : TTTAATATTAAAACCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTGATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGCTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGTCATTGCACCTGTGGCAGGGAAGAAAAAATCCTCCGTAAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAAGGTGGATAATAATGACTACAACCAAACTCAGCTTTCCTCTAAGGGCAGCAGCAATATCGAGCTTTGTGGTGTAAACGAAGTAAACATCACTTTTTCCAGCAAGCATGGCTTTGAGAGCGGAGTGGAGATAAATACTTCAAACCCTACTCACAGA # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //