Array 1 20600-19778 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTNI01000029.1 Microbispora rosea strain ATCC 12950, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20599 29 100.0 32 ............................. AGGCTGGACTGGTCCAGCGTCACCTCGTTCAC 20538 29 100.0 32 ............................. CAGGCGGGTTGAGGATGCCGAGCGGAATGTCG 20477 29 96.6 32 ............................T CCTCGGGCAGCCGGCCCGCGTACCCGTCGCCC 20416 29 96.6 32 ............................G AGACCCAAGGGGAAGCCGGGGCCATCCCCGAA 20355 29 100.0 32 ............................. GAGTAGGTGCGGCCGGGCTGGTTGGTCGCGAC 20294 29 96.6 32 ............................G GGCAAGGAGGCACCCGCCAACGCCAGGCCGTG 20233 29 100.0 32 ............................. TGCTCCGCTCGATCGCGGCGAGCATCGGCTGG 20172 29 100.0 32 ............................. GGCCGATCCCCATACGACGAGACCCGCGTGGG 20111 29 96.6 32 ............................G CGCTGGGAGTCGTTTGCCCCGGAGCGCGACGA 20050 29 100.0 32 ............................. GTCCTGGAGCCCGGATCCGGCGTCGGCACGTT 19989 29 96.6 32 ............................G GACTCCCTGACCACCTTCGGCCAGTGGATGTC 19928 29 100.0 32 ............................. TGACCGACGTGGCGTAGGCGTCGCCGCCGTAC 19867 29 100.0 32 ............................. AGGCGCTCGACGCGGCGACCGTGGCCGCCGAG 19806 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.8 32 GTCGCCCCCGCGCCCGCGGGGATGGTCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCGGACGGGAAGAT # Right flank : ATGCCCGCAGTGTGGTCATTGTGACGCGGGAAGTCGCCCCCGCGCCCGCAGGGATGGTCCCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : GTCGCCCCCGCGCCCGCGGGGATGGTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 22182-21848 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTNI01000029.1 Microbispora rosea strain ATCC 12950, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22181 29 100.0 32 ............................. TTGCGGAGCTGCGGCGTCTTCCGAGCCCGGAT 22120 29 96.6 32 ............................T CCCGTCGCGATCGGGCTCGACACGAAAGGGCC 22059 29 96.6 32 ............................C ATAGGCCGTTTCATGATGGCGGTGTACTCTTG 21998 29 100.0 32 ............................. TTGTTCCGGCCCAGGCCGCCGGTGACGCGGGA 21937 29 100.0 32 ............................. CGGGTCCAGCGGCAGGCGTTGCGGCGACCCAG 21876 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTCGCCCCCGCGCCCGCGGGGATGGTCCG # Left flank : GAAGATGATCTGAACCAGCTCTGGGACGAACGCCTTGGTACCGTGGCGGGCGGCATCAACTGGGCCGACGAGTCCGACCTGGCCATCAACCTCGGCCTCAACCTTGTCCAGCCAACCATGGGTGAAGACCACATCGCCGTCATCGGCCCCGAATTCGACACGCCCGGGTCATCAACATGACCGTCGTCCTCATCGCCGCTCCCGCAGGCCTCCGCGGCCACCTCACACGATGGATGGTCGAAGTCAACGCCGGGGTCTTCGTCGGCAACCCCAGCCGCCGAATCCGTGACCGACTATGGGACCTGCTTGCCACCCGCATCGGAGACGGCCAAGCCATCCTCGTCGAACCCGCCAACAACGAACAAGGATGGAGCGTCCGTACCGCAGGCAAAGACCGCTGGCGCCCCACCGACTTCGACGGCCTCATCCTGTCGGCACGCCGCCGAACCCAACCGAATGAAAACCGCCCCCAGGCCAGATAAACGCGCAGCTCAGCAAGT # Right flank : CCCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCCCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 31740-32806 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTNI01000029.1 Microbispora rosea strain ATCC 12950, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31740 29 96.6 32 ............................G ATGGACGTGCCGTTGATGTTGATGTCCACGAC 31801 29 93.1 32 ........................G...T CCGGCCGCACCGCCCGCCGTGGCGTCGACGTC 31862 29 100.0 32 ............................. CTCTCGGTCAGCGCCTGGACGATTTCCCGGGC 31923 29 96.6 32 ............................G AGATCCTCCGCGTGCTCGACGTATTCGGGCCT 31984 29 100.0 32 ............................. CGTTGCGGTCCGGCGAGACCTCCACCGCGGAG 32045 29 96.6 32 ........T.................... GGGCAGCGCAGGCGAGTCACGGCGTACCCCCC 32106 29 100.0 32 ............................. TCGACGGGTCTGATCTGCTCGACATCGTTCGG 32167 29 100.0 33 ............................. GCCGAGCCGATAGCCCGGATCACCTCAGCACTC 32229 29 96.6 32 ........................C.... TGGCAGGGCGGGTACGTAACCGCGTTCGGCGC 32290 29 93.1 32 ........................C...G CACGGCGGGTCCTGGTCGCTGCGGTCGCCGAC 32351 29 93.1 32 ..T.....................C.... GGCGTCGAGACCGATATCGAGGTGCTGCGTGG 32412 29 93.1 32 ........................C...T CGGGCGATAGCCAGGAACACGCCGGAGGAAAT 32473 29 89.7 32 ..............G.........C...G CGGTTGTCACGGTCCTTCGCGGTCTCGTAGAA 32534 29 89.7 32 ..................A...C.C.... TGGGTGCGCATCCTCGAAGTCGGCGGGGGCCT 32595 29 93.1 32 ........................C...T GAAGATGGCGAGGGCGAGGCCTGCGTCGAGAT 32656 29 93.1 32 ........................C...T ACCTCCACGGTGATGATGTCCGGCGGCAAGGT 32717 29 96.6 32 ........................C.... CTCCCGGCGATCGAGGTCCTGGCCGGCGCCGC 32778 29 86.2 0 .C.............A........C...A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 94.8 32 GTCGGCCCCGCGCCCGCGGGGATGTTCCC # Left flank : GTGCATCCAGGTCAGCCCCGAGTGCCGGACTGCCCGTGCCGCCGTCTCGTCCATCTGCTGAAAAGCCGGGGTCGCCTTCCCGCAATCATGGATGCCACAGATCCAGGCGAAGAACCGGCGCCCGCGCCCAGGACCTCCCGCCACATCCTGCAGCCAGGCCTTGGTCGACGGGGCGAGGTAGCGATCCCAGATCTGCTCGGCGACCGCAGCGGTATCGAGAAGGTGACACATCAGCAGGTTCATACGTCCTGCCGCCTTCGCGGCCGACTTTCCCCATAAAACACCCAACTGCCGTGCTACATCCGGATCCACGGACCCCAGCTCATACTCGTCCAAGGACCTCCTCCTTCACATCGTTCGTGGACCGGTCAAAACACTAGAAGCCGCCACCGACAGGAGCAGGCGATCGTCAGATAGGGTCGCCCGTGGGATCCGAACAGAGCTGAATCGAACTGAATGAAAAACGACACTAGAAGCCAAGAACCCTCTGGTCAGCAAGT # Right flank : AGTCGACGACCTGGATCTCGACCTGCGGGAGATGTCGGCCCTTCACCAGGTCGATGCATCAGTGGCTGATCAGGAGCGCCTCGTCCTTCAGGTAGCTCGGCATCAGAGGCAACCGTCAGCGCACGGCCCCCTTCTTGCGCATTCCGGCCGCACCTGTACGAGGAATAGAGCCGAGGCTGCGCGCGATCACTGCGCCACACCGCGACAATGCGACCGACAGCTCCACCATCAGCCACCCTGGAAGCCGTCGTGAGCCGAGTCCGCTCACCTGTAGCAGCCGTGTGAGCGCGGCCGCCTGGTCGGCCTTTGGTACGGCCGCTCACCCTGTGTGGTTGAGCACGTCCCGGGCGGCGTAGCCGTCGTCGGCCGCTACGGCGCGGATGGTGAGCGTGGTGGGCTCGGCGCGGCCGTCCGAGGTGTCGACTCCTCCGGCCGCGTCGACCACCGATAAGCCGAGCCGGGTCCGGAACACGACCAGGCTGGGGGCTGTGTCGTCGAGC # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGTTCCC # Alternate repeat : GTCGGCCCCGCGCCCGCGGGGATGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9-281 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTNI01000052.1 Microbispora rosea strain ATCC 12950, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 ................T............ CCTCGGTCATACGCCATGAGGTTGGTCACGAG 70 29 100.0 32 ............................. TCCACGGCGACGATCCTGCGGGACATCGAGCT 131 29 100.0 32 ............................. GCGTGACCGGGCCGAGCGGGCACCCAGAACAG 192 29 100.0 32 ............................. TACCCGGGCCGATCCTCACCGACTTCGCCATC 253 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : AAGCGCGTG # Right flank : CTTCGCCCTCGCCGAGGCTAAGGTGATCCCGCGCCACCCGAAGATGCTTCTGCGGTCCTTGAAAGGCCGCTGCGGACAAGCGGCTCCGCTGCCGCGGACTTCGGCATTCGCTAGGTCAAGGTGCCGTTTAATCCAGACGACTTGACGAGGCGAGCCCAGCGGGGGCTGCGGTGGAATTGCCGGGCCAGATCAACGGATCGAGGCAGAGTTCCGTCTGGGCGGCGGTTTCGGAGTGCCCACTGCCATGCTTCTTGCTGGAGGGTGCGTCCACGCAGCCCGCCGTCAGCTTGAGGCGCGTCGTTGCCTGATTTGGGTGCTGAGACGGCTGTGCGCTCCTCAGGAGAGAGTCGGCGGGCGACGCTTTGTCGTACCAGCCGGAAGGCCATTTCCAAGCCGCCGATCATGGCGAAGGCCGGCCAGGCTGCCACGGCACGACCAATGAAGGATGGCTCGGCGACGGCGACGTTGGCGGCAACGCTCGCGAGGCTGCCGACCACCAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //